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Research

Intergenic accumulation of RNA polymerase II maintains the potential for swift transcriptional restart upon release from quiescence

  • Manuela Baquero Pérez
  • Gertjan Laenen
  • Isabelle Loïodice
  • Mickaël Garnier
  • Ugo Szachnowski
  • Antonin Morillon
  • Myriam Ruault
  • Angela Taddei
  • First Published August 12, 2025
Research

Sir3 mediates long-range chromosome interactions in budding yeast

  • Myriam Ruault
  • Vittore F. Scolari
  • Luciana Lazar-Stefanita
  • Antoine Hocher
  • Isabelle Loïodice
  • Romain Koszul
  • Angela Taddei
  • First Published February 12, 2021
Corrigendum

Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping

  • Jordan A. Ramilowski
  • Chi Wai Yip
  • Saumya Agrawal
  • Jen-Chien Chang
  • Yari Ciani
  • Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
  • ... [+107 authors] ...,
  • Ken Yagi
  • Michiel J.L. de Hoon
  • Jay W. Shin
  • Piero Carninci
  • First Published September 14, 2020
Resource

Functional annotation of human long noncoding RNAs via molecular phenotyping

  • Jordan A. Ramilowski
  • Chi Wai Yip
  • Saumya Agrawal
  • Jen-Chien Chang
  • Yari Ciani
  • Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
  • ... [+107 authors] ...,
  • Ken Yagi
  • Michiel J.L. de Hoon
  • Jay W. Shin
  • Piero Carninci
  • First Published July 27, 2020
Research

Expanding heterochromatin reveals discrete subtelomeric domains delimited by chromatin landscape transitions

  • Antoine Hocher
  • Myriam Ruault
  • Petra Kaferle
  • Marc Descrimes
  • Mickaël Garnier
  • Antonin Morillon
  • Angela Taddei
  • First Published October 24, 2018
Letter

The functional importance of telomere clustering: Global changes in gene expression result from SIR factor dispersion

  • Angela Taddei
  • Griet Van Houwe
  • Shigeki Nagai
  • Ionas Erb
  • Erik van Nimwegen
  • Susan M. Gasser
  • First Published January 29, 2009
Methods

Human Disease Genes and Their Cloned Mouse Orthologs: Exploration of the FANTOM2 cDNA Sequence Data Set

  • Lynn M. Schriml
  • David P. Hill
  • Judith A. Blake
  • Hidemasa Bono
  • Anthony Wynshaw-Boris
  • William J. Pavan
  • ... [+1 authors] ...,
  • Brian Z. Ring
  • Kirk Beisel
  • Mitsutoshi Setou
  • Yasushi Okazaki
  • First Published June 2, 2003
LETTER

Continued Discovery of Transcriptional Units Expressed in Cells of the Mouse Mononuclear Phagocyte Lineage

  • Christine A. Wells
  • Timothy Ravasi
  • Razvan Sultana
  • Ken Yagi
  • Piero Carninci
  • Hidemasa Bono Geoffrey Faulkner
  • ... [+2 authors] ...,
  • Yasushi Okazaki
  • John Quackenbush
  • David A. Hume
  • Paul A. Lyons
  • First Published June 2, 2003
LETTER

The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment

  • Sean M. Grimmond
  • Kevin C. Miranda
  • Zheng Yuan
  • Melissa J. Davis
  • David A. Hume
  • Ken Yagi Naoko Tominaga
  • ... [+2 authors] ...,
  • Hidemasa Bono
  • Yoshihide Hayashizaki
  • Yasushi Okazaki
  • Rohan D. Teasdale
  • First Published June 2, 2003
LETTER

Analysis of the Mouse Transcriptome for Genes Involved in the Function of the Nervous System

  • Stefano Gustincich
  • Serge Batalov
  • Kirk W. Beisel
  • Hidemasa Bono
  • Piero Carninci
  • Colin F. Fletcher Sean Grimmond Nobutaka Hirokawa Erich D. Jarvis Tim Jegla Yuka Kawasawa Julianna LeMieux Harukata Miki Elio Raviola Rohan D. Teasdale Naoko Tominaga
  • ... [+11 authors] ...,
  • Ken Yagi
  • Andreas Zimmer
  • Yoshihide Hayashizaki
  • Yasushi Okazaki
  • First Published June 2, 2003
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