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Research

Drosophila melanogaster ovary" > Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary

  • First Published May 15, 2024
Research

Drosophila" > Evidence for the fixation of gene duplications by positive selection in Drosophila

  • First Published April 12, 2016
Research

Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations

  • First Published January 4, 2016
Research

Monodelphis domestica" > Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica

  • First Published September 24, 2013
Research

Random X inactivation in the mule and horse placenta

  • First Published May 29, 2012
Research

Drosophila simulans clade" > Genome sequencing reveals complex speciation in the Drosophila simulans clade

  • First Published April 13, 2012
Research

Disentangling the relationship between sex-biased gene expression and X-linkage

  • First Published April 12, 2012
Research

Impact of microRNA regulation on variation in human gene expression

  • First Published March 28, 2012
Research

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

  • First Published July 27, 2011
Method

Genome-wide identification of conserved regulatory function in diverged sequences

  • First Published May 31, 2011
Article

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

  • First Published November 3, 2009
Letter

Darwinian and demographic forces affecting human protein coding genes

  • First Published March 11, 2009
LETTER

Thylacinus cynocephalus)" > The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

  • First Published January 12, 2009
LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • First Published September 25, 2008
LETTER

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

  • First Published April 14, 2008
RESOURCE

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

  • First Published November 5, 2007
LETTER

cis-regulatory elements using comparative genomics: Some lessons from ENCODE data" > Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data

  • First Published June 13, 2007
RESOURCE

A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

  • First Published June 13, 2007
ARTICLE

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

  • First Published June 13, 2007
LETTER

Using genomic data to unravel the root of the placental mammal phylogeny

  • First Published February 23, 2007
Methods

ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements

  • First Published October 19, 2006
LETTER

cis-regulatory modules" > Experimental validation of predicted mammalian erythroid cis-regulatory modules

  • First Published October 12, 2006
Methods

Reconstructing contiguous regions of an ancestral genome

  • First Published September 18, 2006
LETTER

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla

  • First Published December 19, 2005
LETTER

Ascertainment bias in studies of human genome-wide polymorphism

  • First Published October 26, 2005
Methods

Genomic scans for selective sweeps using SNP data

  • First Published October 26, 2005
PERSPECTIVE

Determinants of the success of whole-genome association testing

  • First Published October 26, 2005
RESOURCE

Galaxy: A platform for interactive large-scale genome analysis

  • First Published September 16, 2005
ARTICLE

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

  • First Published July 15, 2005
ARTICLE

The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern

  • First Published March 21, 2005
ARTICLE

Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution" > Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution

  • First Published January 3, 2005
Chicken Special/Resources

Mulan: Multiple-sequence local alignment and visualization for studying function and evolution

  • First Published December 8, 2004
Chicken Special/Letters

Evolution and functional classification of vertebrate gene deserts

  • First Published December 8, 2004
LETTER

Reconstructing large regions of an ancestral mammalian genome in silico

  • First Published December 1, 2004
Methods

Optimal Haplotype Block-Free Selection of Tagging SNPs for Genome-Wide Association Studies

  • First Published August 2, 2004
RESOURCE

Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner

  • First Published April 1, 2004
Methods

Regulatory Potential Scores From Genome-Wide Three-Way Alignments of Human, Mouse, and Rat

  • First Published April 1, 2004
LETTER

Comparative Analysis of the α-Like Globin Clusters in Mouse, Rat, and Human Chromosomes Indicates a Mechanism Underlying Breaks in Conserved Synteny

  • First Published April 1, 2004
ARTICLE

Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes

  • First Published April 1, 2004
RESOURCE

zPicture: Dynamic Alignment and Visualization Tool for Analyzing Conservation Profiles

  • First Published March 1, 2004
RESOURCE

GALA, a Database for Genomic Sequence Alignments and Annotations

  • First Published April 1, 2003
LETTER

Distinguishing Regulatory DNA From Neutral Sites

  • First Published January 1, 2003
LETTER

Gene Length and Proximity to Neighbors Affect Genome-Wide Expression Levels

  • First Published January 1, 2003
ARTICLE

Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution

  • First Published January 1, 2003
METHODS

Human–Mouse Alignments with BLASTZ

  • First Published December 30, 2002
REPORT

3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome " > Generation and Comparative Analysis of ∼3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome

  • First Published January 1, 2002
INSIGHT/OUTLOOK

The Search for Meaning in Noncoding DNA

  • First Published August 1, 2001
ARTICLE

Sequence and Comparative Analysis of the Mouse 1-Megabase Region Orthologous to the Human 11p15 Imprinted Domain

  • First Published November 1, 2000
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