Resource
Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs
- First Published August 16, 2024
Research
Drosophila melanogaster ovary" > Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary
- First Published May 15, 2024
Method
cis-regulatory elements" > Probabilistic association of differentially expressed genes with cis-regulatory elements
- First Published April 17, 2024
Research
Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells
- First Published October 18, 2023
Research
Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands
- First Published April 20, 2021
Research
Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations
- First Published July 2, 2020
Resource
Dynamics of microRNA expression during mouse prenatal development
- First Published October 23, 2019
Method
A new approach for rare variation collapsing on functional protein domains implicates specific genic regions in ALS
- First Published April 2, 2019
Resource
A genome-wide interactome of DNA-associated proteins in the human liver
- First Published October 11, 2017
Research
Drosophila" > Evidence for the fixation of gene duplications by positive selection in Drosophila
- First Published April 12, 2016
Research
Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations
- First Published January 4, 2016
Research
Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites
- First Published October 20, 2015
Method
CETCh-seq: CRISPR epitope tagging ChIP-seq of DNA-binding proteins
- First Published September 9, 2015
Method
From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing
- First Published December 3, 2013
Resource
Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps
- First Published October 29, 2013
Research
Monodelphis domestica" > Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica
- First Published September 24, 2013
Method
Drosophila genomes" > Efficient identification of Y chromosome sequences in the human and Drosophila genomes
- First Published August 6, 2013
Resource
Dynamic DNA methylation across diverse human cell lines and tissues
- First Published January 16, 2013
Research
Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner
- First Published September 26, 2012
Research
Widespread plasticity in CTCF occupancy linked to DNA methylation
- First Published September 5, 2012
Resource
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
- First Published September 5, 2012
Resource
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
Research
Drosophila simulans clade" > Genome sequencing reveals complex speciation in the Drosophila simulans clade
- First Published April 13, 2012
Research
Disentangling the relationship between sex-biased gene expression and X-linkage
- First Published April 12, 2012
Research
Impact of microRNA regulation on variation in human gene expression
- First Published March 28, 2012
Research
Effects of sequence variation on differential allelic transcription factor occupancy and gene expression
- First Published February 2, 2012
Research
DNA methylation profiling reveals novel biomarkers and important roles for DNA methyltransferases in prostate cancer
- First Published April 26, 2011
Research
Sequence features that drive human promoter function and tissue specificity
- First Published May 25, 2010
Letter
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
- First Published January 12, 2010
Letter
Drosophila" > Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
- First Published November 30, 2009
Article
Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation
- First Published October 2, 2009
Letter
Signals of recent positive selection in a worldwide sample of human populations
- First Published March 23, 2009
Letter
Darwinian and demographic forces affecting human protein coding genes
- First Published March 11, 2009
Methods
Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver
- First Published March 9, 2009
LETTER
Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
- First Published April 14, 2008
LETTER
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
ARTICLE
Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
- First Published June 13, 2007
ARTICLE
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
- First Published June 13, 2007
LETTER
Transcription factor binding and modified histones in human bidirectional promoters
- First Published June 13, 2007
LETTER
Serum response factor binding sites differ in three human cell types
- First Published January 2, 2007
LETTER
Comparative genomics modeling of the NRSF/REST repressor network: From single conserved sites to genome-wide repertoire
- First Published September 8, 2006
LETTER
Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla
- First Published December 19, 2005
ARTICLE
Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome
- First Published December 12, 2005
PERSPECTIVE
Determinants of the success of whole-genome association testing
- First Published October 26, 2005