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RESOURCE

An effective model for natural selection in promoters

  • First Published March 1, 2010
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De novo fragment assembly with short mate-paired reads: Does the read length matter?

  • First Published December 3, 2008
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Dissecting the effects of mtDNA variations on complex traits using mouse conplastic strains

  • First Published November 26, 2008
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Fast and flexible simulation of DNA sequence data

  • First Published November 24, 2008
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EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

  • First Published November 24, 2008
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Caenorhabditis elegans microRNA promoter activity" > Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity

  • First Published November 3, 2008
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A resource for the simultaneous high-resolution mapping of multiple quantitative trait loci in rats: The NIH heterogeneous stock

  • First Published October 29, 2008
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Whole population, genome-wide mapping of hidden relatedness

  • First Published October 29, 2008
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genBlastA: Enabling BLAST to identify homologous gene sequences

  • First Published October 6, 2008
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Haplotype sorting using human fosmid clone end-sequence pairs

  • First Published October 3, 2008
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Arabidopsis thaliana with short reads" > Sequencing of natural strains of Arabidopsis thaliana with short reads

  • First Published September 25, 2008
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Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

  • First Published September 17, 2008
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Mapping short DNA sequencing reads and calling variants using mapping quality scores

  • First Published August 19, 2008
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An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)

  • First Published June 24, 2008
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Hylobates and Nomascus Gibbons by high-resolution synteny mapping" > Tracking the complex flow of chromosome rearrangements from the Hominoidea Ancestor to extant Hylobates and Nomascus Gibbons by high-resolution synteny mapping

  • First Published June 13, 2008
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EagleView: A genome assembly viewer for next-generation sequencing technologies

  • First Published June 11, 2008
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DupMasker: A tool for annotating primate segmental duplications" > DupMasker: A tool for annotating primate segmental duplications

  • First Published May 23, 2008
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A novel DNA sequence database for analyzing human demographic history

  • First Published May 20, 2008
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A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach

  • First Published May 9, 2008
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Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets

  • First Published April 14, 2008
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New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree

  • First Published April 2, 2008
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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

  • First Published March 18, 2008
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ALLPATHS: De novo assembly of whole-genome shotgun microreads

  • First Published March 13, 2008
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De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer

  • First Published March 10, 2008
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WGAViewer: Software for genomic annotation of whole genome association studies

  • First Published February 6, 2008
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Mouse inter-subspecific consomic strains for genetic dissection of quantitative complex traits

  • First Published February 6, 2008
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Mus m. musculus and Mus m. domesticus subspecies" > Mouse consomic strains: Exploiting genetic divergence between Mus m. musculus and Mus m. domesticus subspecies

  • First Published February 6, 2008
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Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar’s lemurs

  • First Published February 1, 2008
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MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

  • First Published November 19, 2007
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A second-generation combined linkage–physical map of the human genome

  • First Published November 7, 2007
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28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

  • First Published November 5, 2007
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Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi

  • First Published November 5, 2007
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Initial sequence and comparative analysis of the cat genome

  • First Published November 1, 2007
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Sequence-based estimation of minisatellite and microsatellite repeat variability

  • First Published October 31, 2007
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SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

  • First Published October 1, 2007
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Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

  • First Published September 25, 2007
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Drosophila melanogaster" > Temporal and spatial transcriptional profiles of aging in Drosophila melanogaster

  • First Published July 10, 2007
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Detecting genetic variation in microarray expression data

  • First Published July 3, 2007
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Construction of a genome-scale structural map at single-nucleotide resolution

  • First Published June 13, 2007
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The ENCODEdb portal: Simplified access to ENCODE Consortium data

  • First Published June 13, 2007
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A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

  • First Published June 13, 2007
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RCPdb: An evolutionary classification and codon usage database for repeat-containing proteins

  • First Published June 13, 2007
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Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB)

  • First Published May 24, 2007
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PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data

  • First Published April 6, 2007
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Saccharomyces cerevisiae" > Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae

  • First Published February 23, 2007
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A meiotic linkage map of the silver fox, aligned and compared to the canine genome

  • First Published February 6, 2007
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MEGAN analysis of metagenomic data

  • First Published January 25, 2007
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Molecular refinement of gibbon genome rearrangements

  • First Published December 21, 2006
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