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Method

Optimal marker genes for c-separated cell types with SepSolve

  • First Published October 9, 2025
Method

Linear-time cluster ensembles of large-scale single-cell RNA-seq and multimodal data

  • First Published February 24, 2021
Method

An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics

  • First Published November 15, 2017
Method

Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome

  • First Published July 22, 2013
Method

Copy-number-aware differential analysis of quantitative DNA sequencing data

  • First Published August 9, 2012
Method

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA

  • First Published March 30, 2012
Method

Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation

  • First Published November 2, 2010
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