Searching journal content for Y. Eugene Yu in author.

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  1. Method: Long-read reconstruction of many diverse haplotypes with devider
    • Jim Shaw,
    • Christina Boucher,
    • Yun William Yu,
    • Noelle Noyes,
    • and Heng Li
    Genome Res. December 2025 35: 2637-2649; Published in Advance September 23, 2025, doi:10.1101/gr.280510.125
  2. Erratum: Erratum: Proving sequence aligners can guarantee accuracy in almost O(m log n) time through an average-case analysis of the seed-chain-extend heuristic
    • Jim Shaw and
    • Yun William Yu
    Genome Res. May 2024 34: 810; doi:10.1101/gr.279618.124
    OPEN ACCESS ARTICLE
  3. Method: Proving sequence aligners can guarantee accuracy in almost O(m log n) time through an average-case analysis of the seed-chain-extend heuristic
    • Jim Shaw and
    • Yun William Yu
    Genome Res. July 2023 33: 1175-1187; Published in Advance March 29, 2023, doi:10.1101/gr.277637.122
    OPEN ACCESS ARTICLE
  4. Research: Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals
    • Huixin Xu,
    • Qi Zhen,
    • Mingzhou Bai,
    • Lin Fang,
    • Yong Zhang,
    • Bao Li,
    • Huiyao Ge,
    • Sunjin Moon,
    • Weiwei Chen,
    • Wenqing Fu,
    • Qiongqiong Xu,
    • Yuwen Zhou,
    • Yafeng Yu,
    • Long Lin,
    • Liang Yong,
    • Tao Zhang,
    • Shirui Chen,
    • Siyang Liu,
    • Hui Zhang,
    • Ruoyan Chen,
    • Lu Cao,
    • Yuanwei Zhang,
    • Ruixue Zhang,
    • Huanjie Yang,
    • Xia Hu,
    • Joshua M. Akey,
    • Xin Jin,
    • and Liangdan Sun
    Genome Res. July 2021 31: 1150-1158; Published in Advance June 21, 2021, doi:10.1101/gr.267963.120
  5. Resource: Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle
    • Lingzhao Fang,
    • Wentao Cai,
    • Shuli Liu,
    • Oriol Canela-Xandri,
    • Yahui Gao,
    • Jicai Jiang,
    • Konrad Rawlik,
    • Bingjie Li,
    • Steven G. Schroeder,
    • Benjamin D. Rosen,
    • Cong-jun Li,
    • Tad S. Sonstegard,
    • Leeson J. Alexander,
    • Curtis P. Van Tassell,
    • Paul M. VanRaden,
    • John B. Cole,
    • Ying Yu,
    • Shengli Zhang,
    • Albert Tenesa,
    • Li Ma,
    • and George E. Liu
    Genome Res. May 2020 30: 790-801; Published in Advance May 18, 2020, doi:10.1101/gr.250704.119
  6. Corrigendum: Corrigendum: Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites
    • Fiorella C. Grandi,
    • James M. Rosser,
    • Simon J. Newkirk,
    • Jun Yin,
    • Xiaoling Jiang,
    • Zhuo Xing,
    • Leanne Whitmore,
    • Sanum Bashir,
    • Zoltán Ivics,
    • Zsuzsanna Izsvák,
    • Ping Ye,
    • Y. Eugene Yu,
    • and Wenfeng An
    Genome Res. February 2020 30: 313; doi:10.1101/gr.261677.120
    OPEN ACCESS ARTICLE
  7. Research: Altered hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways
    • Sanchari Bhattacharyya,
    • Kith Pradhan,
    • Nathaniel Campbell,
    • Jozef Mazdo,
    • Aparna Vasantkumar,
    • Shahina Maqbool,
    • Tushar D. Bhagat,
    • Sonal Gupta,
    • Masako Suzuki,
    • Yiting Yu,
    • John M. Greally,
    • Ulrich Steidl,
    • James Bradner,
    • Meelad Dawlaty,
    • Lucy Godley,
    • Anirban Maitra,
    • and Amit Verma
    Genome Res. November 2017 27: 1830-1842; Published in Advance October 6, 2017, doi:10.1101/gr.222794.117
  8. Research: SETDB1 modulates PRC2 activity at developmental genes independently of H3K9 trimethylation in mouse ES cells
    • Qi Fei,
    • Xiaoqin Yang,
    • Hua Jiang,
    • Qian Wang,
    • Yanyan Yu,
    • Yiling Yu,
    • Wei Yi,
    • Shaolian Zhou,
    • Taiping Chen,
    • Chris Lu,
    • Peter Atadja,
    • Xiaole Shirley Liu,
    • En Li,
    • Yong Zhang,
    • and Jianyong Shou
    Genome Res. September 2015 25: 1325-1335; Published in Advance July 9, 2015, doi:10.1101/gr.177576.114
  9. Research: Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites
    • Fiorella C. Grandi,
    • James M. Rosser,
    • Simon J. Newkirk,
    • Jun Yin,
    • Xiaoling Jiang,
    • Zhuo Xing,
    • Leanne Whitmore,
    • Sanum Bashir,
    • Zoltán Ivics,
    • Zsuzsanna Izsvák,
    • Ping Ye,
    • Y. Eugene Yu,
    • and Wenfeng An
    Genome Res. August 2015 25: 1135-1146; Published in Advance May 20, 2015, doi:10.1101/gr.185132.114
    OPEN ACCESS ARTICLE
  10. Method: Highly active zinc-finger nucleases by extended modular assembly
    • Mital S. Bhakta,
    • Isabelle M. Henry,
    • David G. Ousterout,
    • Kumitaa Theva Das,
    • Sarah H. Lockwood,
    • Joshua F. Meckler,
    • Mark C. Wallen,
    • Artem Zykovich,
    • Yawei Yu,
    • Heather Leo,
    • Lifeng Xu,
    • Charles A. Gersbach,
    • and David J. Segal
    Genome Res. March 2013 23: 530-538; Published in Advance December 5, 2012, doi:10.1101/gr.143693.112
    OPEN ACCESS ARTICLE
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