Searching journal content for Nathan D. Trinklein in author.

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  1. Research: Sequence features that drive human promoter function and tissue specificity
    • Jane M. Landolin,
    • David S. Johnson,
    • Nathan D. Trinklein,
    • Shelly F. Aldred,
    • Catherine Medina,
    • Hennady Shulha,
    • Zhiping Weng,
    • and Richard M. Myers
    Genome Res. July 2010 20: 890-898; Published in Advance May 25, 2010, doi:10.1101/gr.100370.109
  2. LETTER: Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    • David S. Johnson,
    • Wei Li,
    • D. Benjamin Gordon,
    • Arindam Bhattacharjee,
    • Bo Curry,
    • Jayati Ghosh,
    • Leonardo Brizuela,
    • Jason S. Carroll,
    • Myles Brown,
    • Paul Flicek,
    • Christoph M. Koch,
    • Ian Dunham,
    • Mark Bieda,
    • Xiaoqin Xu,
    • Peggy J. Farnham,
    • Philipp Kapranov,
    • David A. Nix,
    • Thomas R. Gingeras,
    • Xinmin Zhang,
    • Heather Holster,
    • Nan Jiang,
    • Roland D. Green,
    • Jun S. Song,
    • Scott A. McCuine,
    • Elizabeth Anton,
    • Loan Nguyen,
    • Nathan D. Trinklein,
    • Zhen Ye,
    • Keith Ching,
    • David Hawkins,
    • Bing Ren,
    • Peter C. Scacheri,
    • Joel Rozowsky,
    • Alexander Karpikov,
    • Ghia Euskirchen,
    • Sherman Weissman,
    • Mark Gerstein,
    • Michael Snyder,
    • Annie Yang,
    • Zarmik Moqtaderi,
    • Heather Hirsch,
    • Hennady P. Shulha,
    • Yutao Fu,
    • Zhiping Weng,
    • Kevin Struhl,
    • Richard M. Myers,
    • Jason D. Lieb,
    • and X. Shirley Liu
    Genome Res. March 2008 18: 393-403; Published in Advance February 7, 2008, doi:10.1101/gr.7080508
  3. LETTER: Transcription factor binding and modified histones in human bidirectional promoters
    • Jane M. Lin,
    • Patrick J. Collins,
    • Nathan D. Trinklein,
    • Yutao Fu,
    • Hualin Xi,
    • Richard M. Myers,
    • and Zhiping Weng
    Genome Res. June 2007 17: 818-827; doi:10.1101/gr.5623407
    OPEN ACCESS ARTICLE
  4. ARTICLE: Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
    • Nathan D. Trinklein,
    • Ulaş Karaöz,
    • Jiaqian Wu,
    • Anason Halees,
    • Shelley Force Aldred,
    • Patrick J. Collins,
    • Deyou Zheng,
    • Zhengdong D. Zhang,
    • Mark B. Gerstein,
    • Michael Snyder,
    • Richard M. Myers,
    • and Zhiping Weng
    Genome Res. June 2007 17: 720-731; doi:10.1101/gr.5716607
    OPEN ACCESS ARTICLE
  5. LETTER: Serum response factor binding sites differ in three human cell types
    • Sara J. Cooper,
    • Nathan D. Trinklein,
    • Loan Nguyen,
    • and Richard M. Myers
    Genome Res. February 2007 17: 136-144; Published in Advance January 2, 2007, doi:10.1101/gr.5875007
  6. ARTICLE: Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome
    • Sara J. Cooper,
    • Nathan D. Trinklein,
    • Elizabeth D. Anton,
    • Loan Nguyen,
    • and Richard M. Myers
    Genome Res. January 2006 16: 1-10; Published in Advance December 12, 2005, doi:10.1101/gr.4222606
  7. Methods: Direct isolation and identification of promoters in the human genome
    • Tae Hoon Kim,
    • Leah O. Barrera,
    • Chunxu Qu,
    • Sara Van Calcar,
    • Nathan D. Trinklein,
    • Sara J. Cooper,
    • Rosa M. Luna,
    • Christopher K. Glass,
    • Michael G. Rosenfeld,
    • Richard M. Myers,
    • and Bing Ren
    Genome Res. June 2005 15: 830-839; Published in Advance May 17, 2005, doi:10.1101/gr.3430605
  8. LETTER: An Abundance of Bidirectional Promoters in the Human Genome
    • Nathan D. Trinklein,
    • Shelley Force Aldred,
    • Sara J. Hartman,
    • Diane I. Schroeder,
    • Robert P. Otillar,
    • and Richard M. Myers
    Genome Res. January 2004 14: 62-66; doi:10.1101/gr.1982804
  9. METHODS: Identification and Functional Analysis of Human Transcriptional Promoters
    • Nathan D. Trinklein,
    • Shelley J. Force Aldred,
    • Alok J. Saldanha,
    • and Richard M. Myers
    Genome Res. February 1, 2003 13: 308-312; doi:10.1101/gr.794803
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