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Nathan D. Trinklein
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Displaying results 1-9 of
9
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Research
:
Sequence features that drive human promoter function and tissue specificity
Jane M. Landolin
,
David S. Johnson
,
Nathan D. Trinklein
,
Shelly F. Aldred
,
Catherine Medina
,
Hennady Shulha
,
Zhiping Weng
,
and
Richard M. Myers
Genome Res.
July 2010
20
:
890
-
898
;
Published in Advance
May 25, 2010
,
doi:
10.1101/gr.100370.109
Abstract
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LETTER
:
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
David S. Johnson
,
Wei Li
,
D. Benjamin Gordon
,
Arindam Bhattacharjee
,
Bo Curry
,
Jayati Ghosh
,
Leonardo Brizuela
,
Jason S. Carroll
,
Myles Brown
,
Paul Flicek
,
Christoph M. Koch
,
Ian Dunham
,
Mark Bieda
,
Xiaoqin Xu
,
Peggy J. Farnham
,
Philipp Kapranov
,
David A. Nix
,
Thomas R. Gingeras
,
Xinmin Zhang
,
Heather Holster
,
Nan Jiang
,
Roland D. Green
,
Jun S. Song
,
Scott A. McCuine
,
Elizabeth Anton
,
Loan Nguyen
,
Nathan D. Trinklein
,
Zhen Ye
,
Keith Ching
,
David Hawkins
,
Bing Ren
,
Peter C. Scacheri
,
Joel Rozowsky
,
Alexander Karpikov
,
Ghia Euskirchen
,
Sherman Weissman
,
Mark Gerstein
,
Michael Snyder
,
Annie Yang
,
Zarmik Moqtaderi
,
Heather Hirsch
,
Hennady P. Shulha
,
Yutao Fu
,
Zhiping Weng
,
Kevin Struhl
,
Richard M. Myers
,
Jason D. Lieb
,
and
X. Shirley Liu
Genome Res.
March 2008
18
:
393
-
403
;
Published in Advance
February 7, 2008
,
doi:
10.1101/gr.7080508
Abstract
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LETTER
:
Transcription factor binding and modified histones in human bidirectional promoters
Jane M. Lin
,
Patrick J. Collins
,
Nathan D. Trinklein
,
Yutao Fu
,
Hualin Xi
,
Richard M. Myers
,
and
Zhiping Weng
Genome Res.
June 2007
17
:
818
-
827
;
doi:
10.1101/gr.5623407
Abstract
Full Text
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OPEN ACCESS ARTICLE
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ARTICLE
:
Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
Nathan D. Trinklein
,
Ulaş Karaöz
,
Jiaqian Wu
,
Anason Halees
,
Shelley Force Aldred
,
Patrick J. Collins
,
Deyou Zheng
,
Zhengdong D. Zhang
,
Mark B. Gerstein
,
Michael Snyder
,
Richard M. Myers
,
and
Zhiping Weng
Genome Res.
June 2007
17
:
720
-
731
;
doi:
10.1101/gr.5716607
Abstract
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OPEN ACCESS ARTICLE
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LETTER
:
Serum response factor binding sites differ in three human cell types
Sara J. Cooper
,
Nathan D. Trinklein
,
Loan Nguyen
,
and
Richard M. Myers
Genome Res.
February 2007
17
:
136
-
144
;
Published in Advance
January 2, 2007
,
doi:
10.1101/gr.5875007
Abstract
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ARTICLE
:
Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome
Sara J. Cooper
,
Nathan D. Trinklein
,
Elizabeth D. Anton
,
Loan Nguyen
,
and
Richard M. Myers
Genome Res.
January 2006
16
:
1
-
10
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4222606
Abstract
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Methods
:
Direct isolation and identification of promoters in the human genome
Tae Hoon Kim
,
Leah O. Barrera
,
Chunxu Qu
,
Sara Van Calcar
,
Nathan D. Trinklein
,
Sara J. Cooper
,
Rosa M. Luna
,
Christopher K. Glass
,
Michael G. Rosenfeld
,
Richard M. Myers
,
and
Bing Ren
Genome Res.
June 2005
15
:
830
-
839
;
Published in Advance
May 17, 2005
,
doi:
10.1101/gr.3430605
Abstract
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LETTER
:
An Abundance of Bidirectional Promoters in the Human Genome
Nathan D. Trinklein
,
Shelley Force Aldred
,
Sara J. Hartman
,
Diane I. Schroeder
,
Robert P. Otillar
,
and
Richard M. Myers
Genome Res.
January 2004
14
:
62
-
66
;
doi:
10.1101/gr.1982804
Abstract
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METHODS
:
Identification and Functional Analysis of Human Transcriptional Promoters
Nathan D. Trinklein
,
Shelley J. Force Aldred
,
Alok J. Saldanha
,
and
Richard M. Myers
Genome Res.
February 1, 2003
13
:
308
-
312
;
doi:
10.1101/gr.794803
Abstract
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