Searching journal content for Chad Nusbaum in author.

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  1. Method: SvABA: genome-wide detection of structural variants and indels by local assembly
    • Jeremiah A. Wala,
    • Pratiti Bandopadhayay,
    • Noah F. Greenwald,
    • Ryan O'Rourke,
    • Ted Sharpe,
    • Chip Stewart,
    • Steve Schumacher,
    • Yilong Li,
    • Joachim Weischenfeldt,
    • Xiaotong Yao,
    • Chad Nusbaum,
    • Peter Campbell,
    • Gad Getz,
    • Matthew Meyerson,
    • Cheng-Zhong Zhang,
    • Marcin Imielinski,
    • and Rameen Beroukhim
    Genome Res. April 2018 28: 581-591; Published in Advance March 13, 2018, doi:10.1101/gr.221028.117
  2. Method: Paired-end sequencing of Fosmid libraries by Illumina
    • Louise J.S. Williams,
    • Diana G. Tabbaa,
    • Na Li,
    • Aaron M. Berlin,
    • Terrance P. Shea,
    • Iain MacCallum,
    • Michael S. Lawrence,
    • Yotam Drier,
    • Gad Getz,
    • Sarah K. Young,
    • David B. Jaffe,
    • Chad Nusbaum,
    • and Andreas Gnirke
    Genome Res. November 2012 22: 2241-2249; Published in Advance July 16, 2012, doi:10.1101/gr.138925.112
  3. Method: Finished bacterial genomes from shotgun sequence data
    • Filipe J. Ribeiro,
    • Dariusz Przybylski,
    • Shuangye Yin,
    • Ted Sharpe,
    • Sante Gnerre,
    • Amr Abouelleil,
    • Aaron M. Berlin,
    • Anna Montmayeur,
    • Terrance P. Shea,
    • Bruce J. Walker,
    • Sarah K. Young,
    • Carsten Russ,
    • Chad Nusbaum,
    • Iain MacCallum,
    • and David B. Jaffe
    Genome Res. November 2012 22: 2270-2277; Published in Advance July 24, 2012, doi:10.1101/gr.141515.112
    OPEN ACCESS ARTICLE
  4. Research: Integrative analysis of the melanoma transcriptome
    • Michael F. Berger,
    • Joshua Z. Levin,
    • Krishna Vijayendran,
    • Andrey Sivachenko,
    • Xian Adiconis,
    • Jared Maguire,
    • Laura A. Johnson,
    • James Robinson,
    • Roel G. Verhaak,
    • Carrie Sougnez,
    • Robert C. Onofrio,
    • Liuda Ziaugra,
    • Kristian Cibulskis,
    • Elisabeth Laine,
    • Jordi Barretina,
    • Wendy Winckler,
    • David E. Fisher,
    • Gad Getz,
    • Matthew Meyerson,
    • David B. Jaffe,
    • Stacey B. Gabriel,
    • Eric S. Lander,
    • Reinhard Dummer,
    • Andreas Gnirke,
    • Chad Nusbaum,
    • and Levi A. Garraway
    Genome Res. April 2010 20: 413-427; Published in Advance February 23, 2010, doi:10.1101/gr.103697.109
    OPEN ACCESS ARTICLE
  5. RESOURCE: ALLPATHS: De novo assembly of whole-genome shotgun microreads
    • Jonathan Butler,
    • Iain MacCallum,
    • Michael Kleber,
    • Ilya A. Shlyakhter,
    • Matthew K. Belmonte,
    • Eric S. Lander,
    • Chad Nusbaum,
    • and David B. Jaffe
    Genome Res. May 2008 18: 810-820; Published in Advance March 13, 2008, doi:10.1101/gr.7337908
  6. Methods: Quality scores and SNP detection in sequencing-by-synthesis systems
    • William Brockman,
    • Pablo Alvarez,
    • Sarah Young,
    • Manuel Garber,
    • Georgia Giannoukos,
    • William L. Lee,
    • Carsten Russ,
    • Eric S. Lander,
    • Chad Nusbaum,
    • and David B. Jaffe
    Genome Res. May 2008 18: 763-770; Published in Advance January 22, 2008, doi:10.1101/gr.070227.107
  7. LETTER: Uneven chromosome contraction and expansion in the maize genome
    • Rémy Bruggmann,
    • Arvind K. Bharti,
    • Heidrun Gundlach,
    • Jinsheng Lai,
    • Sarah Young,
    • Ana C. Pontaroli,
    • Fusheng Wei,
    • Georg Haberer,
    • Galina Fuks,
    • Chunguang Du,
    • Christina Raymond,
    • Matt C. Estep,
    • Renyi Liu,
    • Jeffrey L. Bennetzen,
    • Agnes P. Chan,
    • Pablo D. Rabinowicz,
    • John Quackenbush,
    • W. Brad Barbazuk,
    • Rod A. Wing,
    • Bruce Birren,
    • Chad Nusbaum,
    • Steve Rounsley,
    • Klaus F.X. Mayer,
    • and Joachim Messing
    Genome Res. October 2006 16: 1241-1251; Published in Advance August 10, 2006, doi:10.1101/gr.5338906
  8. Methods: Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
    • Josée Dostie,
    • Todd A. Richmond,
    • Ramy A. Arnaout,
    • Rebecca R. Selzer,
    • William L. Lee,
    • Tracey A. Honan,
    • Eric D. Rubio,
    • Anton Krumm,
    • Justin Lamb,
    • Chad Nusbaum,
    • Roland D. Green,
    • and Job Dekker
    Genome Res. October 2006 16: 1299-1309; Published in Advance September 5, 2006, doi:10.1101/gr.5571506
  9. Methods: Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
    • Jade P. Vinson,
    • David B. Jaffe,
    • Keith O'Neill,
    • Elinor K. Karlsson,
    • Nicole Stange-Thomann,
    • Scott Anderson,
    • Jill P. Mesirov,
    • Nori Satoh,
    • Yutaka Satou,
    • Chad Nusbaum,
    • Bruce Birren,
    • James E. Galagan,
    • and Eric S. Lander
    Genome Res. August 2005 15: 1127-1135; doi:10.1101/gr.3722605
  10. ARTICLE: The Complete Genome and Proteome of Mycoplasma mobile
    • Jacob D. Jaffe,
    • Nicole Stange-Thomann,
    • Cherylyn Smith,
    • David DeCaprio,
    • Sheila Fisher,
    • Jonathan Butler,
    • Sarah Calvo,
    • Tim Elkins,
    • Michael G. FitzGerald,
    • Nabil Hafez,
    • Chinnappa D. Kodira,
    • John Major,
    • Shunguang Wang,
    • Jane Wilkinson,
    • Robert Nicol,
    • Chad Nusbaum,
    • Bruce Birren,
    • Howard C. Berg,
    • and George M. Church
    Genome Res. August 2004 14: 1447-1461; doi:10.1101/gr.2674004
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