Searching journal content for Brian J. Raney in author.

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  1. Method: Highly accurate assembly polishing with DeepPolisher
    • Mira Mastoras,
    • Mobin Asri,
    • Lucas Brambrink,
    • Prajna Hebbar,
    • Alexey Kolesnikov,
    • Daniel E. Cook,
    • Maria Nattestad,
    • Julian Lucas,
    • Taylor S. Won,
    • Pi-Chuan Chang,
    • Andrew Carroll,
    • Benedict Paten,
    • Kishwar Shafin,
    • and and the Human Pangenome Reference Consortium
    Genome Res. July 2025 35: 1595-1608; Published in Advance May 19, 2025, doi:10.1101/gr.280149.124
  2. Method: Chromosome assembly of large and complex genomes using multiple references
    • Mikhail Kolmogorov,
    • Joel Armstrong,
    • Brian J. Raney,
    • Ian Streeter,
    • Matthew Dunn,
    • Fengtang Yang,
    • Duncan Odom,
    • Paul Flicek,
    • Thomas M. Keane,
    • David Thybert,
    • Benedict Paten,
    • and Son Pham
    Genome Res. November 2018 28: 1720-1732; Published in Advance October 19, 2018, doi:10.1101/gr.236273.118
    OPEN ACCESS ARTICLE
  3. Resource: The genome of the vervet (Chlorocebus aethiops sabaeus)
    • Wesley C. Warren,
    • Anna J. Jasinska,
    • Raquel García-Pérez,
    • Hannes Svardal,
    • Chad Tomlinson,
    • Mariano Rocchi,
    • Nicoletta Archidiacono,
    • Oronzo Capozzi,
    • Patrick Minx,
    • Michael J. Montague,
    • Kim Kyung,
    • LaDeana W. Hillier,
    • Milinn Kremitzki,
    • Tina Graves,
    • Colby Chiang,
    • Jennifer Hughes,
    • Nam Tran,
    • Yu Huang,
    • Vasily Ramensky,
    • Oi-wa Choi,
    • Yoon J. Jung,
    • Christopher A. Schmitt,
    • Nikoleta Juretic,
    • Jessica Wasserscheid,
    • Trudy R. Turner,
    • Roger W. Wiseman,
    • Jennifer J. Tuscher,
    • Julie A. Karl,
    • Jörn E. Schmitz,
    • Roland Zahn,
    • David H. O'Connor,
    • Eugene Redmond,
    • Alex Nisbett,
    • Béatrice Jacquelin,
    • Michaela C. Müller-Trutwin,
    • Jason M. Brenchley,
    • Michel Dione,
    • Martin Antonio,
    • Gary P. Schroth,
    • Jay R. Kaplan,
    • Matthew J. Jorgensen,
    • Gregg W.C. Thomas,
    • Matthew W. Hahn,
    • Brian J. Raney,
    • Bronwen Aken,
    • Rishi Nag,
    • Juergen Schmitz,
    • Gennady Churakov,
    • Angela Noll,
    • Roscoe Stanyon,
    • David Webb,
    • Francoise Thibaud-Nissen,
    • Magnus Nordborg,
    • Tomas Marques-Bonet,
    • Ken Dewar,
    • George M. Weinstock,
    • Richard K. Wilson,
    • and Nelson B. Freimer
    Genome Res. December 2015 25: 1921-1933; Published in Advance September 16, 2015, doi:10.1101/gr.192922.115
  4. Resource: Alignathon: a competitive assessment of whole-genome alignment methods
    • Dent Earl,
    • Ngan Nguyen,
    • Glenn Hickey,
    • Robert S. Harris,
    • Stephen Fitzgerald,
    • Kathryn Beal,
    • Igor Seledtsov,
    • Vladimir Molodtsov,
    • Brian J. Raney,
    • Hiram Clawson,
    • Jaebum Kim,
    • Carsten Kemena,
    • Jia-Ming Chang,
    • Ionas Erb,
    • Alexander Poliakov,
    • Minmei Hou,
    • Javier Herrero,
    • William James Kent,
    • Victor Solovyev,
    • Aaron E. Darling,
    • Jian Ma,
    • Cedric Notredame,
    • Michael Brudno,
    • Inna Dubchak,
    • David Haussler,
    • and Benedict Paten
    Genome Res. December 2014 24: 2077-2089; Published in Advance October 1, 2014, doi:10.1101/gr.174920.114
    OPEN ACCESS ARTICLE
  5. RESOURCE: 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
    • Webb Miller,
    • Kate Rosenbloom,
    • Ross C. Hardison,
    • Minmei Hou,
    • James Taylor,
    • Brian Raney,
    • Richard Burhans,
    • David C. King,
    • Robert Baertsch,
    • Daniel Blankenberg,
    • Sergei L. Kosakovsky Pond,
    • Anton Nekrutenko,
    • Belinda Giardine,
    • Robert S. Harris,
    • Svitlana Tyekucheva,
    • Mark Diekhans,
    • Thomas H. Pringle,
    • William J. Murphy,
    • Arthur Lesk,
    • George M. Weinstock,
    • Kerstin Lindblad-Toh,
    • Richard A. Gibbs,
    • Eric S. Lander,
    • Adam Siepel,
    • David Haussler,
    • and W. James Kent
    Genome Res. December 2007 17: 1797-1808; Published in Advance November 5, 2007, doi:10.1101/gr.6761107
  6. Methods: Reconstructing contiguous regions of an ancestral genome
    • Jian Ma,
    • Louxin Zhang,
    • Bernard B. Suh,
    • Brian J. Raney,
    • Richard C. Burhans,
    • W. James Kent,
    • Mathieu Blanchette,
    • David Haussler,
    • and Webb Miller
    Genome Res. December 2006 16: 1557-1565; Published in Advance September 18, 2006, doi:10.1101/gr.5383506
    OPEN ACCESS ARTICLE
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