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  T2T-CHM13 improves read mapping and detection of clinically relevant genetic variation in the Swedish population

  • Daniel Schmitz,
  • Adam Ameur,
  • and Åsa Johansson

  Genome Res. November 2025 35: 2377-2388; Published in Advance September 16, 2025, doi:10.1101/gr.279320.124
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  Long-read sequencing reveals HBV integration patterns and oncogenic impact on early-onset hepatocellular carcinoma

  • Yao Wang,
  • Dong Yu,
  • Yue Mei,
  • ZhiDa Fu,
  • Jian Lin,
  • Di Wu,
  • Yuan Yang,
  • and Hongli Yan

  Genome Res. November 2025 35: 2389-2405; Published in Advance September 16, 2025, doi:10.1101/gr.279889.124
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  Nanopore direct RNA sequencing reveals METTL2A-mediated m³C sites in poly(A) RNA

  • Shuhei Mitsutomi,
  • Anzu Sugawara,
  • Masahide Seki,
  • Yutaka Suzuki,
  • Sotaro Miyao,
  • Haozhe Du,
  • Kenji Takahashi,
  • Yusuke Mizukami,
  • Kenzui Taniue,
  • and Nobuyoshi Akimitsu

  Genome Res. November 2025 35: 2406-2417; Published in Advance October 30, 2025, doi:10.1101/gr.280269.124
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  A gene regulatory element modulates myosin expression and controls cardiomyocyte response to stress

  • Taylor Anglen,
  • Irene M. Kaplow,
  • Baekgyu Choi,
  • Enya Dewars,
  • Robin M. Perelli,
  • Kevin T. Hagy,
  • Duc Tran,
  • Megan E. Ramaker,
  • Svati H. Shah,
  • Inkyung Jung,
  • Andrew P. Landstrom,
  • Ravi Karra,
  • Yarui Diao,
  • and Charles A. Gersbach

  Genome Res. November 2025 35: 2418-2432; Published in Advance October 22, 2025, doi:10.1101/gr.280825.125
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  Autism spectrum disorder risk genes have convergent effects on transcription and neuronal firing patterns in primary neurons

  • Alekh Paranjapye,
  • Rili Ahmad,
  • Steven Su,
  • Abraham J. Waldman,
  • Jennifer E. Phillips-Cremins,
  • Shuo Zhang,
  • and Erica Korb

  Genome Res. November 2025 35: 2433-2444; Published in Advance October 20, 2025, doi:10.1101/gr.280698.125
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  Dynamic evolution of satellite DNAs drastically differentiates the genomes of Tribolium sibling species

  • Damira Veseljak,
  • Evelin Despot-Slade,
  • Marin Volarić,
  • Lucija Horvat,
  • Tanja Vojvoda Zeljko,
  • Nevenka Meštrović,
  • and Brankica Mravinac

  Genome Res. November 2025 35: 2445-2460; Published in Advance September 16, 2025, doi:10.1101/gr.280516.125
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  Adaptation of centromeres to breakage through local genomic and epigenomic remodeling in wheat

  • Jingwei Zhou,
  • Yuhong Huang,
  • Huan Ma,
  • Yiqian Chen,
  • Chuanye Chen,
  • Fangpu Han,
  • and Handong Su

  Genome Res. November 2025 35: 2461-2471; Published in Advance September 30, 2025, doi:10.1101/gr.280913.125
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  Synergistic regulation by H3K36 and H3K27 methylation defines the chromatin landscape to control virulence and secondary metabolism in a fungal pathogen

  • Xingmin Han,
  • Chenghui Xu,
  • Yiyi Ren,
  • Meiling Guo,
  • Jiayue Yan,
  • Xuan Wang,
  • Chao Liu,
  • Qin Gu,
  • Xing-Xing Shen,
  • Zhonghua Ma,
  • and Yun Chen

  Genome Res. November 2025 35: 2472-2487; Published in Advance October 14, 2025, doi:10.1101/gr.280560.125
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