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Table of Contents
August 2019; 29 (8)
Research
Select this article
High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma
Michael J. Johnston
,
Ana Nikolic
,
Nicoletta Ninkovic
,
Paul Guilhamon
,
Florence M.G. Cavalli
,
Steven Seaman
,
Franz J. Zemp
,
John Lee
,
Aly Abdelkareem
,
Katrina Ellestad
,
Alex Murison
,
Michelle M. Kushida
,
Fiona J. Coutinho
,
Yussanne Ma
,
Andrew J. Mungall
,
Richard Moore
,
Marco A. Marra
,
Michael D. Taylor
,
Peter B. Dirks
,
Trevor J. Pugh
,
Sorana Morrissy
,
Bradley St Croix
,
Douglas J. Mahoney
,
Mathieu Lupien
,
and
Marco Gallo
Genome Res.
August 2019
29
:
1211
-
1222
;
Published in Advance
June 27, 2019
,
doi:
10.1101/gr.246520.118
Abstract
Full Text
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Glucocorticoid receptor quaternary structure drives chromatin occupancy and transcriptional outcome
Ville Paakinaho
,
Thomas A. Johnson
,
Diego M. Presman
,
and
Gordon L. Hager
Genome Res.
August 2019
29
:
1223
-
1234
;
Published in Advance
July 23, 2019
,
doi:
10.1101/gr.244814.118
Abstract
Full Text
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Two contrasting classes of nucleolus-associated domains in mouse fibroblast heterochromatin
Anastassiia Vertii
,
Jianhong Ou
,
Jun Yu
,
Aimin Yan
,
Hervé Pagès
,
Haibo Liu
,
Lihua Julie Zhu
,
and
Paul D. Kaufman
Genome Res.
August 2019
29
:
1235
-
1249
;
Published in Advance
June 14, 2019
,
doi:
10.1101/gr.247072.118
Abstract
Full Text
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Whole-genome sequencing reveals high complexity of copy number variation at insecticide resistance loci in malaria mosquitoes
Eric R. Lucas
,
Alistair Miles
,
Nicholas J. Harding
,
Chris S. Clarkson
,
Mara K.N. Lawniczak
,
Dominic P. Kwiatkowski
,
David Weetman
,
Martin J. Donnelly
,
and
The Anopheles gambiae 1000 Genomes Consortium
Genome Res.
August 2019
29
:
1250
-
1261
;
Published in Advance
July 25, 2019
,
doi:
10.1101/gr.245795.118
Abstract
Full Text
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Circadian gene variants and the skeletal muscle circadian clock contribute to the evolutionary divergence in longevity across
Drosophila
populations
Liam C. Hunt
,
Jianqin Jiao
,
Yong-Dong Wang
,
David Finkelstein
,
Deepti Rao
,
Michelle Curley
,
Maricela Robles-Murguia
,
Abbas Shirinifard
,
Vishwajeeth R. Pagala
,
Junmin Peng
,
Yiping Fan
,
and
Fabio Demontis
Genome Res.
August 2019
29
:
1262
-
1276
;
Published in Advance
June 27, 2019
,
doi:
10.1101/gr.246884.118
Abstract
Full Text
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Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family
Alex de Mendoza
,
Jahnvi Pflueger
,
and
Ryan Lister
Genome Res.
August 2019
29
:
1277
-
1286
;
Published in Advance
June 25, 2019
,
doi:
10.1101/gr.243774.118
Abstract
Full Text
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Characterization of functional relationships of R-loops with gene transcription and epigenetic modifications in rice
Yuan Fang
,
Lifen Chen
,
Kande Lin
,
Yilong Feng
,
Pengyue Zhang
,
Xiucai Pan
,
Jennifer Sanders
,
Yufeng Wu
,
Xiu-e Wang
,
Zhen Su
,
Caiyan Chen
,
Hairong Wei
,
and
Wenli Zhang
Genome Res.
August 2019
29
:
1287
-
1297
;
Published in Advance
July 1, 2019
,
doi:
10.1101/gr.246009.118
Abstract
Full Text
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Local features determine Ty3 targeting frequency at RNA polymerase III transcription start sites
Kurt Patterson
,
Farbod Shavarebi
,
Christophe Magnan
,
Ivan Chang
,
Xiaojie Qi
,
Pierre Baldi
,
Virginia Bilanchone
,
and
Suzanne B. Sandmeyer
Genome Res.
August 2019
29
:
1298
-
1309
;
Published in Advance
June 27, 2019
,
doi:
10.1101/gr.240861.118
Abstract
Full Text
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Methods
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Estimation of allele-specific fitness effects across human protein-coding sequences and implications for disease
Yi-Fei Huang
and
Adam Siepel
Genome Res.
August 2019
29
:
1310
-
1321
;
Published in Advance
June 27, 2019
,
doi:
10.1101/gr.245522.118
Abstract
Full Text
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Efficient and flexible tagging of endogenous genes by homology-independent intron targeting
Yevgeniy V. Serebrenik
,
Stephanie E. Sansbury
,
Saranya Santhosh Kumar
,
Jorge Henao-Mejia
,
and
Ophir Shalem
Genome Res.
August 2019
29
:
1322
-
1328
;
Published in Advance
June 25, 2019
,
doi:
10.1101/gr.246413.118
Abstract
Full Text
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Single-molecule long-read sequencing reveals the chromatin basis of gene expression
Yunhao Wang
,
Anqi Wang
,
Zujun Liu
,
Andrew L. Thurman
,
Linda S. Powers
,
Meng Zou
,
Yue Zhao
,
Adam Hefel
,
Yunyi Li
,
Joseph Zabner
,
and
Kin Fai Au
Genome Res.
August 2019
29
:
1329
-
1342
;
Published in Advance
June 14, 2019
,
doi:
10.1101/gr.251116.119
Abstract
Full Text
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A novel synthetic-genetic-array–based yeast one-hybrid system for high discovery rate and short processing time
Chung-Shu Yeh
,
Zhifeng Wang
,
Fang Miao
,
Hongyan Ma
,
Chung-Ting Kao
,
Tzu-Shu Hsu
,
Jhong-He Yu
,
Er-Tsi Hung
,
Chia-Chang Lin
,
Chen-Yu Kuan
,
Ni-Chiao Tsai
,
Chenguang Zhou
,
Guan-Zheng Qu
,
Jing Jiang
,
Guifeng Liu
,
Jack P. Wang
,
Wei Li
,
Vincent L. Chiang
,
Tien-Hsien Chang
,
and
Ying-Chung Jimmy Lin
Genome Res.
August 2019
29
:
1343
-
1351
;
Published in Advance
June 11, 2019
,
doi:
10.1101/gr.245951.118
Abstract
Full Text
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BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs
Dmitry Meleshko
,
Hosein Mohimani
,
Vittorio Tracanna
,
Iman Hajirasouliha
,
Marnix H. Medema
,
Anton Korobeynikov
,
and
Pavel A. Pevzner
Genome Res.
August 2019
29
:
1352
-
1362
;
Published in Advance
June 3, 2019
,
doi:
10.1101/gr.243477.118
Abstract
Full Text
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Benchmark and integration of resources for the estimation of human transcription factor activities
Luz Garcia-Alonso
,
Christian H. Holland
,
Mahmoud M. Ibrahim
,
Denes Turei
,
and
Julio Saez-Rodriguez
Genome Res.
August 2019
29
:
1363
-
1375
;
Published in Advance
July 24, 2019
,
doi:
10.1101/gr.240663.118
Abstract
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August 2019;
29
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