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Research

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  Pathogenicity and selective constraint on variation near splice sites

  • Jenny Lord,
  • Giuseppe Gallone,
  • Patrick J. Short,
  • Jeremy F. McRae,
  • Holly Ironfield,
  • Elizabeth H. Wynn,
  • Sebastian S. Gerety,
  • Liu He,
  • Bronwyn Kerr,
  • Diana S. Johnson,
  • Emma McCann,
  • Esther Kinning,
  • Frances Flinter,
  • I. Karen Temple,
  • Jill Clayton-Smith,
  • Meriel McEntagart,
  • Sally Ann Lynch,
  • Shelagh Joss,
  • Sofia Douzgou,
  • Tabib Dabir,
  • Virginia Clowes,
  • Vivienne P.M. McConnell,
  • Wayne Lam,
  • Caroline F. Wright,
  • David R. FitzPatrick,
  • Helen V. Firth,
  • Jeffrey C. Barrett,
  • Matthew E. Hurles,
  • and on behalf of the Deciphering Developmental Disorders study

  Genome Res. February 2019 29: 159-170; Published in Advance December 26, 2018, doi:10.1101/gr.238444.118
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  Systematic interrogation of human promoters

  • Shira Weingarten-Gabbay,
  • Ronit Nir,
  • Shai Lubliner,
  • Eilon Sharon,
  • Yael Kalma,
  • Adina Weinberger,
  • and Eran Segal

  Genome Res. February 2019 29: 171-183; Published in Advance January 8, 2019, doi:10.1101/gr.236075.118
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  MicroRNAs reinforce repression of PRC2 transcriptional targets independently and through a feed-forward regulatory network

  • Haridha Shivram,
  • Steven V. Le,
  • and Vishwanath R. Iyer

  Genome Res. February 2019 29: 184-192; Published in Advance January 16, 2019, doi:10.1101/gr.238311.118
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  A dynamic and integrated epigenetic program at distal regions orchestrates transcriptional responses to VEGFA

  • Shiyan Wang,
  • Jiahuan Chen,
  • Sara P. Garcia,
  • Xiaodong Liang,
  • Fang Zhang,
  • Pengyi Yan,
  • Huijing Yu,
  • Weiting Wei,
  • Zixuan Li,
  • Jingfang Wang,
  • Huangying Le,
  • Zeguang Han,
  • Xusheng Luo,
  • Daniel S. Day,
  • Sean M. Stevens,
  • Yan Zhang,
  • Peter J. Park,
  • Zhi-jie Liu,
  • Kun Sun,
  • Guo-cheng Yuan,
  • William T. Pu,
  • and Bing Zhang

  Genome Res. February 2019 29: 193-207; Published in Advance January 22, 2019, doi:10.1101/gr.239053.118
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  Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs

  • Joana Carlevaro-Fita,
  • Taisia Polidori,
  • Monalisa Das,
  • Carmen Navarro,
  • Tatjana I. Zoller,
  • and Rory Johnson

  Genome Res. February 2019 29: 208-222; Published in Advance December 26, 2018, doi:10.1101/gr.229922.117
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  An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells

  • Zhizhuo Zhang,
  • Kern Rei Chng,
  • Shreyas Lingadahalli,
  • Zikai Chen,
  • Mei Hui Liu,
  • Huy Hoang Do,
  • Shaojiang Cai,
  • Nicola Rinaldi,
  • Huay Mei Poh,
  • Guoliang Li,
  • Ying Ying Sung,
  • Charlie L. Heng,
  • Leighton J. Core,
  • Si Kee Tan,
  • Xiaoan Ruan,
  • John T. Lis,
  • Manolis Kellis,
  • Yijun Ruan,
  • Wing-Kin Sung,
  • and Edwin Cheung

  Genome Res. February 2019 29: 223-235; Published in Advance January 3, 2019, doi:10.1101/gr.230243.117
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  CTCF sites display cell cycle–dependent dynamics in factor binding and nucleosome positioning

  • Marlies E. Oomen,
  • Anders S. Hansen,
  • Yu Liu,
  • Xavier Darzacq,
  • and Job Dekker

  Genome Res. February 2019 29: 236-249; Published in Advance January 17, 2019, doi:10.1101/gr.241547.118
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  Transcription factor activity and nucleosome organization in mitosis

  • Nicola Festuccia,
  • Nick Owens,
  • Thaleia Papadopoulou,
  • Inma Gonzalez,
  • Alexandra Tachtsidi,
  • Sandrine Vandoermel-Pournin,
  • Elena Gallego,
  • Nancy Gutierrez,
  • Agnès Dubois,
  • Michel Cohen-Tannoudji,
  • and Pablo Navarro

  Genome Res. February 2019 29: 250-260; Published in Advance January 17, 2019, doi:10.1101/gr.243048.118
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  Gene duplication and genetic innovation in cereal genomes

  • Hui Guo,
  • Yuannian Jiao,
  • Xu Tan,
  • Xiyin Wang,
  • Xianzhong Huang,
  • Huizhe Jin,
  • and Andrew H. Paterson

  Genome Res. February 2019 29: 261-269; Published in Advance January 16, 2019, doi:10.1101/gr.237511.118
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