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  Human-specific features of spatial gene expression and regulation in eight brain regions

  • Chuan Xu,
  • Qian Li,
  • Olga Efimova,
  • Liu He,
  • Shoji Tatsumoto,
  • Vita Stepanova,
  • Takao Oishi,
  • Toshifumi Udono,
  • Katsushi Yamaguchi,
  • Shuji Shigenobu,
  • Akiyoshi Kakita,
  • Hiroyuki Nawa,
  • Philipp Khaitovich,
  • and Yasuhiro Go

  Genome Res. August 2018 28: 1097-1110; Published in Advance June 13, 2018, doi:10.1101/gr.231357.117
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  A comprehensive characterization of cis-acting splicing-associated variants in human cancer

  • Yuichi Shiraishi,
  • Keisuke Kataoka,
  • Kenichi Chiba,
  • Ai Okada,
  • Yasunori Kogure,
  • Hiroko Tanaka,
  • Seishi Ogawa,
  • and Satoru Miyano

  Genome Res. August 2018 28: 1111-1125; Published in Advance July 16, 2018, doi:10.1101/gr.231951.117
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  Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

  • Maria Nattestad,
  • Sara Goodwin,
  • Karen Ng,
  • Timour Baslan,
  • Fritz J. Sedlazeck,
  • Philipp Rescheneder,
  • Tyler Garvin,
  • Han Fang,
  • James Gurtowski,
  • Elizabeth Hutton,
  • Elizabeth Tseng,
  • Chen-Shan Chin,
  • Timothy Beck,
  • Yogi Sundaravadanam,
  • Melissa Kramer,
  • Eric Antoniou,
  • John D. McPherson,
  • James Hicks,
  • W. Richard McCombie,
  • and Michael C. Schatz

  Genome Res. August 2018 28: 1126-1135; Published in Advance June 28, 2018, doi:10.1101/gr.231100.117
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  Immune signatures correlate with L1 retrotransposition in gastrointestinal cancers

  • Hyunchul Jung,
  • Jung Kyoon Choi,
  • and Eunjung Alice Lee

  Genome Res. August 2018 28: 1136-1146; Published in Advance July 3, 2018, doi:10.1101/gr.231837.117
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  Switching roles for DNA and histone methylation depend on evolutionary ages of human endogenous retroviruses

  • Hitoshi Ohtani,
  • Minmin Liu,
  • Wanding Zhou,
  • Gangning Liang,
  • and Peter A. Jones

  Genome Res. August 2018 28: 1147-1157; Published in Advance July 3, 2018, doi:10.1101/gr.234229.118
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  A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

  • Amit Blumberg,
  • Charles G. Danko,
  • Anshul Kundaje,
  • and Dan Mishmar

  Genome Res. August 2018 28: 1158-1168; Published in Advance July 12, 2018, doi:10.1101/gr.230409.117
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  Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana

  • Maximilian O. Press,
  • Rajiv C. McCoy,
  • Ashley N. Hall,
  • Joshua M. Akey,
  • and Christine Queitsch

  Genome Res. August 2018 28: 1169-1178; Published in Advance July 3, 2018, doi:10.1101/gr.231753.117
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  The organization of genome duplication is a critical determinant of the landscape of genome maintenance

  • Blanca Gómez-Escoda and
  • Pei-Yun Jenny Wu

  Genome Res. August 2018 28: 1179-1192; Published in Advance June 22, 2018, doi:10.1101/gr.224527.117
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