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Research

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  Evolutionary expansion of DNA hypomethylation in the mammalian germline genome

  • Jianghan Qu,
  • Emily Hodges,
  • Antoine Molaro,
  • Pascal Gagneux,
  • Matthew D. Dean,
  • Gregory J. Hannon,
  • and Andrew D. Smith

  Genome Res. February 2018 28: 145-158; Published in Advance December 19, 2017, doi:10.1101/gr.225896.117
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  Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis

  • Hector L. Franco,
  • Anusha Nagari,
  • Venkat S. Malladi,
  • Wenqian Li,
  • Yuanxin Xi,
  • Dana Richardson,
  • Kendra L. Allton,
  • Kaori Tanaka,
  • Jing Li,
  • Shino Murakami,
  • Khandan Keyomarsi,
  • Mark T. Bedford,
  • Xiaobing Shi,
  • Wei Li,
  • Michelle C. Barton,
  • Sharon Y.R. Dent,
  • and W. Lee Kraus

  Genome Res. February 2018 28: 159-170; Published in Advance December 22, 2017, doi:10.1101/gr.226019.117
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  Local sequence features that influence AP-1 cis-regulatory activity

  • Hemangi G. Chaudhari and
  • Barak A. Cohen

  Genome Res. February 2018 28: 171-181; Published in Advance January 5, 2018, doi:10.1101/gr.226530.117
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  Transcription factor activity rhythms and tissue-specific chromatin interactions explain circadian gene expression across organs

  • Jake Yeung,
  • Jérôme Mermet,
  • Céline Jouffe,
  • Julien Marquis,
  • Aline Charpagne,
  • Frédéric Gachon,
  • and Felix Naef

  Genome Res. February 2018 28: 182-191; Published in Advance December 18, 2017, doi:10.1101/gr.222430.117
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  The nuclear matrix protein HNRNPU maintains 3D genome architecture globally in mouse hepatocytes

  • Hui Fan,
  • Pin Lv,
  • Xiangru Huo,
  • Jicheng Wu,
  • Qianfeng Wang,
  • Lu Cheng,
  • Yun Liu,
  • Qi-Qun Tang,
  • Ling Zhang,
  • Feng Zhang,
  • Xiaoqi Zheng,
  • Hao Wu,
  • and Bo Wen

  Genome Res. February 2018 28: 192-202; Published in Advance December 22, 2017, doi:10.1101/gr.224576.117
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  Transcription rate strongly affects splicing fidelity and cotranscriptionality in budding yeast

  • Vahid Aslanzadeh,
  • Yuanhua Huang,
  • Guido Sanguinetti,
  • and Jean D. Beggs

  Genome Res. February 2018 28: 203-213; Published in Advance December 18, 2017, doi:10.1101/gr.225615.117
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  Conserved non-AUG uORFs revealed by a novel regression analysis of ribosome profiling data

  • Pieter Spealman,
  • Armaghan W. Naik,
  • Gemma E. May,
  • Scott Kuersten,
  • Lindsay Freeberg,
  • Robert F. Murphy,
  • and Joel McManus

  Genome Res. February 2018 28: 214-222; Published in Advance December 18, 2017, doi:10.1101/gr.221507.117
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