Table of Contents

December 2017; 27 (12)

Research

  • Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation

    • Maria Warnefors,
    • Katharina Mössinger,
    • Jean Halbert,
    • Tania Studer,
    • John L. VandeBerg,
    • Isa Lindgren,
    • Amir Fallahshahroudi,
    • Per Jensen,
    • and Henrik Kaessmann
    Genome Res. December 2017 27: 1961-1973; Published in Advance October 27, 2017, doi:10.1101/gr.225391.117
    OPEN ACCESS ARTICLE

  • Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage

    • Ray Marin,
    • Diego Cortez,
    • Francesco Lamanna,
    • Madapura M. Pradeepa,
    • Evgeny Leushkin,
    • Philippe Julien,
    • Angélica Liechti,
    • Jean Halbert,
    • Thoomke Brüning,
    • Katharina Mössinger,
    • Timo Trefzer,
    • Christian Conrad,
    • Halie N. Kerver,
    • Juli Wade,
    • Patrick Tschopp,
    • and Henrik Kaessmann
    Genome Res. December 2017 27: 1974-1987; Published in Advance November 13, 2017, doi:10.1101/gr.223727.117
    OPEN ACCESS ARTICLE

  • Deep sequencing of natural and experimental populations of Drosophila melanogaster reveals biases in the spectrum of new mutations

    • Zoe June Assaf,
    • Susanne Tilk,
    • Jane Park,
    • Mark L. Siegal,
    • and Dmitri A. Petrov
    Genome Res. December 2017 27: 1988-2000; Published in Advance October 27, 2017, doi:10.1101/gr.219956.116

  • Comparative genome analysis of programmed DNA elimination in nematodes

    • Jianbin Wang,
    • Shenghan Gao,
    • Yulia Mostovoy,
    • Yuanyuan Kang,
    • Maxim Zagoskin,
    • Yongqiao Sun,
    • Bing Zhang,
    • Laura K. White,
    • Alice Easton,
    • Thomas B. Nutman,
    • Pui-Yan Kwok,
    • Songnian Hu,
    • Martin K. Nielsen,
    • and Richard E. Davis
    Genome Res. December 2017 27: 2001-2014; Published in Advance November 8, 2017, doi:10.1101/gr.225730.117

  • Deep learning of the regulatory grammar of yeast 5′ untranslated regions from 500,000 random sequences

    • Josh T. Cuperus,
    • Benjamin Groves,
    • Anna Kuchina,
    • Alexander B. Rosenberg,
    • Nebojsa Jojic,
    • Stanley Fields,
    • and Georg Seelig
    Genome Res. December 2017 27: 2015-2024; Published in Advance November 2, 2017, doi:10.1101/gr.224964.117

Methods

  • A novel approach for data integration and disease subtyping

    • Tin Nguyen,
    • Rebecca Tagett,
    • Diana Diaz,
    • and Sorin Draghici
    Genome Res. December 2017 27: 2025-2039; Published in Advance October 24, 2017, doi:10.1101/gr.215129.116

  • Rapid molecular assays to study human centromere genomics

    • Rafael Contreras-Galindo,
    • Sabrina Fischer,
    • Anjan K. Saha,
    • John D. Lundy,
    • Patrick W. Cervantes,
    • Mohamad Mourad,
    • Claire Wang,
    • Brian Qian,
    • Manhong Dai,
    • Fan Meng,
    • Arul Chinnaiyan,
    • Gilbert S. Omenn,
    • Mark H. Kaplan,
    • and David M. Markovitz
    Genome Res. December 2017 27: 2040-2049; Published in Advance November 15, 2017, doi:10.1101/gr.219709.116

  • GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

    • Daniel L. Cameron,
    • Jan Schröder,
    • Jocelyn Sietsma Penington,
    • Hongdo Do,
    • Ramyar Molania,
    • Alexander Dobrovic,
    • Terence P. Speed,
    • and Anthony T. Papenfuss
    Genome Res. December 2017 27: 2050-2060; Published in Advance November 2, 2017, doi:10.1101/gr.222109.117
    OPEN ACCESS ARTICLE

  • Cre-dependent Cas9-expressing pigs enable efficient in vivo genome editing

    • Kepin Wang,
    • Qin Jin,
    • Degong Ruan,
    • Yi Yang,
    • Qishuai Liu,
    • Han Wu,
    • Zhiwei Zhou,
    • Zhen Ouyang,
    • Zhaoming Liu,
    • Yu Zhao,
    • Bentian Zhao,
    • Quanjun Zhang,
    • Jiangyun Peng,
    • Chengdan Lai,
    • Nana Fan,
    • Yanhui Liang,
    • Ting Lan,
    • Nan Li,
    • Xiaoshan Wang,
    • Xinlu Wang,
    • Yong Fan,
    • Pieter A. Doevendans,
    • Joost P.G. Sluijter,
    • Pentao Liu,
    • Xiaoping Li,
    • and Liangxue Lai
    Genome Res. December 2017 27: 2061-2071; Published in Advance November 16, 2017, doi:10.1101/gr.222521.117

  • Nanopore sequencing of complex genomic rearrangements in yeast reveals mechanisms of repeat-mediated double-strand break repair

    • Ryan J. McGinty,
    • Rachel G. Rubinstein,
    • Alexander J. Neil,
    • Margaret Dominska,
    • Denis Kiktev,
    • Thomas D. Petes,
    • and Sergei M. Mirkin
    Genome Res. December 2017 27: 2072-2082; Published in Advance November 7, 2017, doi:10.1101/gr.228148.117
    OPEN ACCESS ARTICLE

  • An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics

    • Ulrich Omasits,
    • Adithi R. Varadarajan,
    • Michael Schmid,
    • Sandra Goetze,
    • Damianos Melidis,
    • Marc Bourqui,
    • Olga Nikolayeva,
    • Maxime Québatte,
    • Andrea Patrignani,
    • Christoph Dehio,
    • Juerg E. Frey,
    • Mark D. Robinson,
    • Bernd Wollscheid,
    • and Christian H. Ahrens
    Genome Res. December 2017 27: 2083-2095; Published in Advance November 15, 2017, doi:10.1101/gr.218255.116
    OPEN ACCESS ARTICLE

Resources

  • Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

    • Aaron C. Daugherty,
    • Robin W. Yeo,
    • Jason D. Buenrostro,
    • William J. Greenleaf,
    • Anshul Kundaje,
    • and Anne Brunet
    Genome Res. December 2017 27: 2096-2107; Published in Advance November 15, 2017, doi:10.1101/gr.226233.117
    OPEN ACCESS ARTICLE

  • Genome-wide discovery of active regulatory elements and transcription factor footprints in Caenorhabditis elegans using DNase-seq

    • Margaret C.W. Ho,
    • Porfirio Quintero-Cadena,
    • and Paul W. Sternberg
    Genome Res. December 2017 27: 2108-2119; Published in Advance October 26, 2017, doi:10.1101/gr.223735.117

  • Quantitative RNA-seq meta-analysis of alternative exon usage in C. elegans

    • Nicolas J. Tourasse,
    • Jonathan R.M. Millet,
    • and Denis Dupuy
    Genome Res. December 2017 27: 2120-2128; Published in Advance October 31, 2017, doi:10.1101/gr.224626.117

Corrigendum

  • Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

    • Juan L. Mateo,
    • Debbie L.C. van den Berg,
    • Maximilian Haeussler,
    • Daniela Drechsel,
    • Zachary B. Gaber,
    • Diogo S. Castro,
    • Paul Robson,
    • Q. Richard Lu,
    • Gregory E. Crawford,
    • Paul Flicek,
    • Laurence Ettwiller,
    • Joachim Wittbrodt,
    • François Guillemot,
    • and Ben Martynoga
    Genome Res. December 2017 27: 2129; doi:10.1101/gr.231845.117
    OPEN ACCESS ARTICLE

Reviewer Index

|

This Issue

December 2017; 27 (12)
Cover
  1. Research
  2. Methods
  3. Resources
  4. Corrigendum
  5. Reviewer Index

Find articles in this issue containing these words:

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research