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Research

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  Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)

  • Gang Li,
  • Brian W. Davis,
  • Eduardo Eizirik,
  • and William J. Murphy

  Genome Res. January 2016 26: 1-11; Published in Advance October 30, 2015, doi:10.1101/gr.186668.114
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  RNA structure replaces the need for U2AF2 in splicing

  • Chien-Ling Lin,
  • Allison J. Taggart,
  • Kian Huat Lim,
  • Kamil J. Cygan,
  • Luciana Ferraris,
  • Robbert Creton,
  • Yen-Tsung Huang,
  • and William G. Fairbrother

  Genome Res. January 2016 26: 12-23; Published in Advance November 13, 2015, doi:10.1101/gr.181008.114
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  Subcellular RNA profiling links splicing and nuclear DICER1 to alternative cleavage and polyadenylation

  • Jonathan Neve,
  • Kaspar Burger,
  • Wencheng Li,
  • Mainul Hoque,
  • Radhika Patel,
  • Bin Tian,
  • Monika Gullerova,
  • and Andre Furger

  Genome Res. January 2016 26: 24-35; Published in Advance November 6, 2015, doi:10.1101/gr.193995.115
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  SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes

  • Yue Shen,
  • Giovanni Stracquadanio,
  • Yun Wang,
  • Kun Yang,
  • Leslie A. Mitchell,
  • Yaxin Xue,
  • Yizhi Cai,
  • Tai Chen,
  • Jessica S. Dymond,
  • Kang Kang,
  • Jianhui Gong,
  • Xiaofan Zeng,
  • Yongfen Zhang,
  • Yingrui Li,
  • Qiang Feng,
  • Xun Xu,
  • Jun Wang,
  • Jian Wang,
  • Huanming Yang,
  • Jef D. Boeke,
  • and Joel S. Bader

  Genome Res. January 2016 26: 36-49; Published in Advance November 13, 2015, doi:10.1101/gr.193433.115
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  Nascent RNA folding mitigates transcription-associated mutagenesis

  • Xiaoshu Chen,
  • Jian-Rong Yang,
  • and Jianzhi Zhang

  Genome Res. January 2016 26: 50-59; Published in Advance October 30, 2015, doi:10.1101/gr.195164.115
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  High mutational rates of large-scale duplication and deletion in Daphnia pulex

  • Nathan Keith,
  • Abraham E. Tucker,
  • Craig E. Jackson,
  • Way Sung,
  • José Ignacio Lucas Lledó,
  • Daniel R. Schrider,
  • Sarah Schaack,
  • Jeffry L. Dudycha,
  • Matthew Ackerman,
  • Andrew J. Younge,
  • Joseph R. Shaw,
  • and Michael Lynch

  Genome Res. January 2016 26: 60-69; Published in Advance October 30, 2015, doi:10.1101/gr.191338.115
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  Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains

  • Sergey V. Ulianov,
  • Ekaterina E. Khrameeva,
  • Alexey A. Gavrilov,
  • Ilya M. Flyamer,
  • Pavel Kos,
  • Elena A. Mikhaleva,
  • Aleksey A. Penin,
  • Maria D. Logacheva,
  • Maxim V. Imakaev,
  • Alexander Chertovich,
  • Mikhail S. Gelfand,
  • Yuri Y. Shevelyov,
  • and Sergey V. Razin

  Genome Res. January 2016 26: 70-84; Published in Advance October 30, 2015, doi:10.1101/gr.196006.115
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  MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum

  • Maria Ninova,
  • Matthew Ronshaugen,
  • and Sam Griffiths-Jones

  Genome Res. January 2016 26: 85-96; Published in Advance October 30, 2015, doi:10.1101/gr.193367.115
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  Loss of HP1 causes depletion of H3K27me3 from facultative heterochromatin and gain of H3K27me2 at constitutive heterochromatin

  • Kirsty Jamieson,
  • Elizabeth T. Wiles,
  • Kevin J. McNaught,
  • Simone Sidoli,
  • Neena Leggett,
  • Yanchun Shao,
  • Benjamin A. Garcia,
  • and Eric U. Selker

  Genome Res. January 2016 26: 97-107; Published in Advance November 4, 2015, doi:10.1101/gr.194555.115
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