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Research

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  Comprehensive identification and analysis of human accelerated regulatory DNA

  • Rachel M. Gittelman,
  • Enna Hun,
  • Ferhat Ay,
  • Jennifer Madeoy,
  • Len Pennacchio,
  • William S. Noble,
  • R. David Hawkins,
  • and Joshua M. Akey

  Genome Res. September 2015 25: 1245-1255; Published in Advance June 23, 2015, doi:10.1101/gr.192591.115
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  Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization

  • Marco Mariotti,
  • Didac Santesmasses,
  • Salvador Capella-Gutierrez,
  • Andrea Mateo,
  • Carme Arnan,
  • Rory Johnson,
  • Salvatore D'Aniello,
  • Sun Hee Yim,
  • Vadim N. Gladyshev,
  • Florenci Serras,
  • Montserrat Corominas,
  • Toni Gabaldón,
  • and Roderic Guigó

  Genome Res. September 2015 25: 1256-1267; Published in Advance July 20, 2015, doi:10.1101/gr.190538.115
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  A widespread role of the motif environment in transcription factor binding across diverse protein families

  • Iris Dror,
  • Tamar Golan,
  • Carmit Levy,
  • Remo Rohs,
  • and Yael Mandel-Gutfreund

  Genome Res. September 2015 25: 1268-1280; Published in Advance July 9, 2015, doi:10.1101/gr.184671.114
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  Acute TNF-induced repression of cell identity genes is mediated by NFκB-directed redistribution of cofactors from super-enhancers

  • Søren Fisker Schmidt,
  • Bjørk Ditlev Larsen,
  • Anne Loft,
  • Ronni Nielsen,
  • Jesper Grud Skat Madsen,
  • and Susanne Mandrup

  Genome Res. September 2015 25: 1281-1294; Published in Advance June 25, 2015, doi:10.1101/gr.188300.114
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  Functional compensation among HMGN variants modulates the DNase I hypersensitive sites at enhancers

  • Tao Deng,
  • Z. Iris Zhu,
  • Shaofei Zhang,
  • Yuri Postnikov,
  • Di Huang,
  • Marion Horsch,
  • Takashi Furusawa,
  • Johannes Beckers,
  • Jan Rozman,
  • Martin Klingenspor,
  • Oana Amarie,
  • Jochen Graw,
  • Birgit Rathkolb,
  • Eckhard Wolf,
  • Thure Adler,
  • Dirk H. Busch,
  • Valérie Gailus-Durner,
  • Helmut Fuchs,
  • Martin Hrabě de Angelis,
  • Arjan van der Velde,
  • Lino Tessarollo,
  • Ivan Ovcherenko,
  • David Landsman,
  • and Michael Bustin

  Genome Res. September 2015 25: 1295-1308; Published in Advance July 8, 2015, doi:10.1101/gr.192229.115
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  Dynamics and function of distal regulatory elements during neurogenesis and neuroplasticity

  • Sudhir Thakurela,
  • Sanjeeb Kumar Sahu,
  • Angela Garding,
  • and Vijay K. Tiwari

  Genome Res. September 2015 25: 1309-1324; Published in Advance July 13, 2015, doi:10.1101/gr.190926.115
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  SETDB1 modulates PRC2 activity at developmental genes independently of H3K9 trimethylation in mouse ES cells

  • Qi Fei,
  • Xiaoqin Yang,
  • Hua Jiang,
  • Qian Wang,
  • Yanyan Yu,
  • Yiling Yu,
  • Wei Yi,
  • Shaolian Zhou,
  • Taiping Chen,
  • Chris Lu,
  • Peter Atadja,
  • Xiaole Shirley Liu,
  • En Li,
  • Yong Zhang,
  • and Jianyong Shou

  Genome Res. September 2015 25: 1325-1335; Published in Advance July 9, 2015, doi:10.1101/gr.177576.114
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  Regulation of the ESC transcriptome by nuclear long noncoding RNAs

  • Jan H. Bergmann,
  • Jingjing Li,
  • Mélanie A. Eckersley-Maslin,
  • Frank Rigo,
  • Susan M. Freier,
  • and David L. Spector

  Genome Res. September 2015 25: 1336-1346; Published in Advance June 5, 2015, doi:10.1101/gr.189027.114
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  Identifying genomic changes associated with insecticide resistance in the dengue mosquito Aedes aegypti by deep targeted sequencing

  • Frederic Faucon,
  • Isabelle Dusfour,
  • Thierry Gaude,
  • Vincent Navratil,
  • Frederic Boyer,
  • Fabrice Chandre,
  • Patcharawan Sirisopa,
  • Kanutcharee Thanispong,
  • Waraporn Juntarajumnong,
  • Rodolphe Poupardin,
  • Theeraphap Chareonviriyaphap,
  • Romain Girod,
  • Vincent Corbel,
  • Stephane Reynaud,
  • and Jean-Philippe David

  Genome Res. September 2015 25: 1347-1359; Published in Advance July 23, 2015, doi:10.1101/gr.189225.115
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  Genome specialization and decay of the strangles pathogen, Streptococcus equi, is driven by persistent infection

  • Simon R. Harris,
  • Carl Robinson,
  • Karen F. Steward,
  • Katy S. Webb,
  • Romain Paillot,
  • Julian Parkhill,
  • Matthew T.G. Holden,
  • and Andrew S. Waller

  Genome Res. September 2015 25: 1360-1371; Published in Advance July 9, 2015, doi:10.1101/gr.189803.115
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