Table of Contents

June 2011; 21 (6)

Perspective

Research

  • Human population dispersal “Out of Africa” estimated from linkage disequilibrium and allele frequencies of SNPs

    • Brian P. McEvoy,
    • Joseph E. Powell,
    • Michael E. Goddard,
    • and Peter M. Visscher
    Genome Res. June 2011 21: 821-829; Published in Advance April 25, 2011, doi:10.1101/gr.119636.110

  • Natural genetic variation caused by small insertions and deletions in the human genome

    • Ryan E. Mills,
    • W. Stephen Pittard,
    • Julienne M. Mullaney,
    • Umar Farooq,
    • Todd H. Creasy,
    • Anup A. Mahurkar,
    • David M. Kemeza,
    • Daniel S. Strassler,
    • Chris P. Ponting,
    • Caleb Webber,
    • and Scott E. Devine
    Genome Res. June 2011 21: 830-839; Published in Advance April 1, 2011, doi:10.1101/gr.115907.110

  • Alu repeat discovery and characterization within human genomes

    • Fereydoun Hormozdiari,
    • Can Alkan,
    • Mario Ventura,
    • Iman Hajirasouliha,
    • Maika Malig,
    • Faraz Hach,
    • Deniz Yorukoglu,
    • Phuong Dao,
    • Marzieh Bakhshi,
    • S. Cenk Sahinalp,
    • and Evan E. Eichler
    Genome Res. June 2011 21: 840-849; Published in Advance December 3, 2010, doi:10.1101/gr.115956.110

  • Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus

    • Julie E. Horvath,
    • Christina B. Sheedy,
    • Stephanie L. Merrett,
    • Abdoulaye Banire Diallo,
    • David L. Swofford,
    • NISC Comparative Sequencing Program,
    • Eric D. Green,
    • and Huntington F. Willard
    Genome Res. June 2011 21: 850-862; Published in Advance April 25, 2011, doi:10.1101/gr.111849.110

  • High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes

    • Penka Markova-Raina and
    • Dmitri Petrov
    Genome Res. June 2011 21: 863-874; Published in Advance March 10, 2011, doi:10.1101/gr.115949.110

  • Stable and dynamic nucleosome states during a meiotic developmental process

    • Liye Zhang,
    • Hong Ma,
    • and B. Franklin Pugh
    Genome Res. June 2011 21: 875-884; Published in Advance April 22, 2011, doi:10.1101/gr.117465.110

  • Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

    • Mikael R. Andersen,
    • Margarita P. Salazar,
    • Peter J. Schaap,
    • Peter J.I. van de Vondervoort,
    • David Culley,
    • Jette Thykaer,
    • Jens C. Frisvad,
    • Kristian F. Nielsen,
    • Richard Albang,
    • Kaj Albermann,
    • Randy M. Berka,
    • Gerhard H. Braus,
    • Susanna A. Braus-Stromeyer,
    • Luis M. Corrochano,
    • Ziyu Dai,
    • Piet W.M. van Dijck,
    • Gerald Hofmann,
    • Linda L. Lasure,
    • Jon K. Magnuson,
    • Hildegard Menke,
    • Martin Meijer,
    • Susan L. Meijer,
    • Jakob B. Nielsen,
    • Michael L. Nielsen,
    • Albert J.J. van Ooyen,
    • Herman J. Pel,
    • Lars Poulsen,
    • Rob A. Samson,
    • Hein Stam,
    • Adrian Tsang,
    • Johannes M. van den Brink,
    • Alex Atkins,
    • Andrea Aerts,
    • Harris Shapiro,
    • Jasmyn Pangilinan,
    • Asaf Salamov,
    • Yigong Lou,
    • Erika Lindquist,
    • Susan Lucas,
    • Jane Grimwood,
    • Igor V. Grigoriev,
    • Christian P. Kubicek,
    • Diego Martinez,
    • Noël N.M.E. van Peij,
    • Johannes A. Roubos,
    • Jens Nielsen,
    • and Scott E. Baker
    Genome Res. June 2011 21: 885-897; Published in Advance May 4, 2011, doi:10.1101/gr.112169.110
    OPEN ACCESS ARTICLE

Methods

  • Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy

    • Wuxian Shi,
    • Marco Punta,
    • Jen Bohon,
    • J. Michael Sauder,
    • Rhijuta D'Mello,
    • Mike Sullivan,
    • John Toomey,
    • Don Abel,
    • Marco Lippi,
    • Andrea Passerini,
    • Paolo Frasconi,
    • Stephen K. Burley,
    • Burkhard Rost,
    • and Mark R. Chance
    Genome Res. June 2011 21: 898-907; Published in Advance April 11, 2011, doi:10.1101/gr.115097.110

  • Distinct DNA methylation patterns associated with active and inactive centromeres of the maize B chromosome

    • Dal-Hoe Koo,
    • Fangpu Han,
    • James A. Birchler,
    • and Jiming Jiang
    Genome Res. June 2011 21: 908-914; Published in Advance April 25, 2011, doi:10.1101/gr.116202.110

  • High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome

    • Sam Alsford,
    • Daniel J. Turner,
    • Samson O. Obado,
    • Alejandro Sanchez-Flores,
    • Lucy Glover,
    • Matthew Berriman,
    • Christiane Hertz-Fowler,
    • and David Horn
    Genome Res. June 2011 21: 915-924; Published in Advance March 1, 2011, doi:10.1101/gr.115089.110
    OPEN ACCESS ARTICLE

  • Transcript amplification from single bacterium for transcriptome analysis

    • Yun Kang,
    • Michael H. Norris,
    • Jan Zarzycki-Siek,
    • William C. Nierman,
    • Stuart P. Donachie,
    • and Tung T. Hoang
    Genome Res. June 2011 21: 925-935; Published in Advance May 2, 2011, doi:10.1101/gr.116103.110

Resources

Erratum

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This Issue

June 2011; 21 (6)
Cover
  1. Perspective
  2. Research
  3. Methods
  4. Resources
  5. Erratum

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