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Research

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  RAF gene fusion breakpoints in pediatric brain tumors are characterized by significant enrichment of sequence microhomology

  • Andrew R.J. Lawson,
  • Guy F.L. Hindley,
  • Tim Forshew,
  • Ruth G. Tatevossian,
  • Gabriel A. Jamie,
  • Gavin P. Kelly,
  • Geoffrey A. Neale,
  • Jing Ma,
  • Tania A. Jones,
  • David W. Ellison,
  • and Denise Sheer

  Genome Res. April 2011 21: 505-514; Published in Advance March 10, 2011, doi:10.1101/gr.115782.110
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  Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors

  • Andrew Feber,
  • Gareth A. Wilson,
  • Lu Zhang,
  • Nadege Presneau,
  • Bernadine Idowu,
  • Thomas A. Down,
  • Vardhman K. Rakyan,
  • Luke A. Noon,
  • Alison C. Lloyd,
  • Elia Stupka,
  • Vassia Schiza,
  • Andrew E. Teschendorff,
  • Gary P. Schroth,
  • Adrienne Flanagan,
  • and Stephan Beck

  Genome Res. April 2011 21: 515-524; Published in Advance February 1, 2011, doi:10.1101/gr.109678.110
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  Large duplications at reciprocal translocation breakpoints that might be the counterpart of large deletions and could arise from stalled replication bubbles

  • Karen D. Howarth,
  • Jessica C.M. Pole,
  • Juliet C. Beavis,
  • Elizabeth M. Batty,
  • Scott Newman,
  • Graham R. Bignell,
  • and Paul A.W. Edwards

  Genome Res. April 2011 21: 525-534; Published in Advance January 20, 2011, doi:10.1101/gr.114116.110
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  Recurrence, submicroscopic complexity, and potential clinical relevance of copy gains detected by array CGH that are shown to be unbalanced insertions by FISH

  • Nicholas J. Neill,
  • Blake C. Ballif,
  • Allen N. Lamb,
  • Sumit Parikh,
  • J. Britt Ravnan,
  • Roger A. Schultz,
  • Beth S. Torchia,
  • Jill A. Rosenfeld,
  • and Lisa G. Shaffer

  Genome Res. April 2011 21: 535-544; Published in Advance March 7, 2011, doi:10.1101/gr.114579.110
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  RNA sequencing reveals the role of splicing polymorphisms in regulating human gene expression

  • Emilie Lalonde,
  • Kevin C.H. Ha,
  • Zibo Wang,
  • Amandine Bemmo,
  • Claudia L. Kleinman,
  • Tony Kwan,
  • Tomi Pastinen,
  • and Jacek Majewski

  Genome Res. April 2011 21: 545-554; Published in Advance December 20, 2010, doi:10.1101/gr.111211.110
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  Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers

  • Aurélien A. Sérandour,
  • Stéphane Avner,
  • Frédéric Percevault,
  • Florence Demay,
  • Maud Bizot,
  • Céline Lucchetti-Miganeh,
  • Frédérique Barloy-Hubler,
  • Myles Brown,
  • Mathieu Lupien,
  • Raphaël Métivier,
  • Gilles Salbert,
  • and Jérôme Eeckhoute

  Genome Res. April 2011 21: 555-565; Published in Advance January 13, 2011, doi:10.1101/gr.111534.110
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  High resolution mapping of Twist to DNA in Drosophila embryos: Efficient functional analysis and evolutionary conservation

  • Anil Ozdemir,
  • Katherine I. Fisher-Aylor,
  • Shirley Pepke,
  • Manoj Samanta,
  • Leslie Dunipace,
  • Kenneth McCue,
  • Lucy Zeng,
  • Nobuo Ogawa,
  • Barbara J. Wold,
  • and Angelike Stathopoulos

  Genome Res. April 2011 21: 566-577; Published in Advance March 7, 2011, doi:10.1101/gr.104018.109
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  Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm

  • Shan-Fu Wu,
  • Haiying Zhang,
  • and Bradley R. Cairns

  Genome Res. April 2011 21: 578-589; Published in Advance March 7, 2011, doi:10.1101/gr.113167.110
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  Coordinated histone modifications are associated with gene expression variation within and between species

  • Misook Ha,
  • Danny W-K. Ng,
  • Wen-Hsiung Li,
  • and Z. Jeffrey Chen

  Genome Res. April 2011 21: 590-598; Published in Advance February 4, 2011, doi:10.1101/gr.116467.110
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  Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

  • Ovidiu Popa,
  • Einat Hazkani-Covo,
  • Giddy Landan,
  • William Martin,
  • and Tal Dagan

  Genome Res. April 2011 21: 599-609; Published in Advance January 26, 2011, doi:10.1101/gr.115592.110
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