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Research

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  Contrasting GC-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes

  • Jonathan Romiguier,
  • Vincent Ranwez,
  • Emmanuel J.P. Douzery,
  • and Nicolas Galtier

  Genome Res. August 2010 20: 1001-1009; Published in Advance June 7, 2010, doi:10.1101/gr.104372.109
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  Signatures of RNA binding proteins globally coupled to effective microRNA target sites

  • Anders Jacobsen,
  • Jiayu Wen,
  • Debora S. Marks,
  • and Anders Krogh

  Genome Res. August 2010 20: 1010-1019; Published in Advance May 27, 2010, doi:10.1101/gr.103259.109
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  Systematic genetic and genomic analysis of cytochrome P450 enzyme activities in human liver

  • Xia Yang,
  • Bin Zhang,
  • Cliona Molony,
  • Eugene Chudin,
  • Ke Hao,
  • Jun Zhu,
  • Andrea Gaedigk,
  • Christine Suver,
  • Hua Zhong,
  • J. Steven Leeder,
  • F. Peter Guengerich,
  • Stephen C. Strom,
  • Erin Schuetz,
  • Thomas H. Rushmore,
  • Roger G. Ulrich,
  • J. Greg Slatter,
  • Eric E. Schadt,
  • Andrew Kasarskis,
  • and Pek Yee Lum

  Genome Res. August 2010 20: 1020-1036; Published in Advance June 10, 2010, doi:10.1101/gr.103341.109
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  Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

  • Brad G. Hoffman,
  • Gordon Robertson,
  • Bogard Zavaglia,
  • Mike Beach,
  • Rebecca Cullum,
  • Sam Lee,
  • Galina Soukhatcheva,
  • Leping Li,
  • Elizabeth D. Wederell,
  • Nina Thiessen,
  • Mikhail Bilenky,
  • Timothee Cezard,
  • Angela Tam,
  • Baljit Kamoh,
  • Inanc Birol,
  • Derek Dai,
  • YongJun Zhao,
  • Martin Hirst,
  • C. Bruce Verchere,
  • Cheryl D. Helgason,
  • Marco A. Marra,
  • Steven J.M. Jones,
  • and Pamela A. Hoodless

  Genome Res. August 2010 20: 1037-1051; Published in Advance June 15, 2010, doi:10.1101/gr.104356.109
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  A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells

  • Michael R. Tallack,
  • Tom Whitington,
  • Wai Shan Yuen,
  • Elanor N. Wainwright,
  • Janelle R. Keys,
  • Brooke B. Gardiner,
  • Ehsan Nourbakhsh,
  • Nicole Cloonan,
  • Sean M. Grimmond,
  • Timothy L. Bailey,
  • and Andrew C. Perkins

  Genome Res. August 2010 20: 1052-1063; Published in Advance May 27, 2010, doi:10.1101/gr.106575.110
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  Genome-wide identification of TAL1's functional targets: Insights into its mechanisms of action in primary erythroid cells

  • Mira T. Kassouf,
  • Jim R. Hughes,
  • Stephen Taylor,
  • Simon J. McGowan,
  • Shamit Soneji,
  • Angela L. Green,
  • Paresh Vyas,
  • and Catherine Porcher

  Genome Res. August 2010 20: 1064-1083; Published in Advance June 21, 2010, doi:10.1101/gr.104935.110
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  Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila

  • Marcin von Grotthuss,
  • Michael Ashburner,
  • and José M. Ranz

  Genome Res. August 2010 20: 1084-1096; Published in Advance July 2, 2010, doi:10.1101/gr.103713.109
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  Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility

  • Xuemei Lu,
  • Joshua A. Shapiro,
  • Chau-Ti Ting,
  • Yan Li,
  • Chunyan Li,
  • Jin Xu,
  • Huanwei Huang,
  • Ya-Jen Cheng,
  • Anthony J. Greenberg,
  • Shou-Hsien Li,
  • Mao-Lien Wu,
  • Yang Shen,
  • and Chung-I Wu

  Genome Res. August 2010 20: 1097-1102; Published in Advance May 28, 2010, doi:10.1101/gr.076620.108
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  Natural selection shapes nucleotide polymorphism across the genome of the nematode Caenorhabditis briggsae

  • Asher D. Cutter and
  • Jae Young Choi

  Genome Res. August 2010 20: 1103-1111; Published in Advance May 27, 2010, doi:10.1101/gr.104331.109
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  Protein variation in blood-dwelling schistosome worms generated by differential splicing of micro-exon gene transcripts

  • Ricardo DeMarco,
  • William Mathieson,
  • Sophia J. Manuel,
  • Gary P. Dillon,
  • Rachel S. Curwen,
  • Peter D. Ashton,
  • Alasdair C. Ivens,
  • Matthew Berriman,
  • Sergio Verjovski-Almeida,
  • and R. Alan Wilson

  Genome Res. August 2010 20: 1112-1121; Published in Advance July 6, 2010, doi:10.1101/gr.100099.109
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