Table of Contents

February 2010; 20 (2)

Article

  • Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis

    • Ichiro Hiratani,
    • Tyrone Ryba,
    • Mari Itoh,
    • Joy Rathjen,
    • Michael Kulik,
    • Bernadett Papp,
    • Eden Fussner,
    • David P. Bazett-Jones,
    • Kathrin Plath,
    • Stephen Dalton,
    • Peter D. Rathjen,
    • and David M. Gilbert
    Genome Res. February 2010 20: 155-169; Published in Advance December 1, 2009, doi:10.1101/gr.099796.109

Letter

  • Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus

    • Biola M. Javierre,
    • Agustin F. Fernandez,
    • Julia Richter,
    • Fatima Al-Shahrour,
    • J. Ignacio Martin-Subero,
    • Javier Rodriguez-Ubreva,
    • Maria Berdasco,
    • Mario F. Fraga,
    • Terrance P. O'Hanlon,
    • Lisa G. Rider,
    • Filipe V. Jacinto,
    • F. Javier Lopez-Longo,
    • Joaquin Dopazo,
    • Marta Forn,
    • Miguel A. Peinado,
    • Luis Carreño,
    • Amr H. Sawalha,
    • John B. Harley,
    • Reiner Siebert,
    • Manel Esteller,
    • Frederick W. Miller,
    • and Esteban Ballestar
    Genome Res. February 2010 20: 170-179; Published in Advance December 22, 2009, doi:10.1101/gr.100289.109

  • Sex-specific and lineage-specific alternative splicing in primates

    • Ran Blekhman,
    • John C. Marioni,
    • Paul Zumbo,
    • Matthew Stephens,
    • and Yoav Gilad
    Genome Res. February 2010 20: 180-189; Published in Advance December 15, 2009, doi:10.1101/gr.099226.109
    OPEN ACCESS ARTICLE

  • Bayesian network analysis of targeting interactions in chromatin

    • Bas van Steensel,
    • Ulrich Braunschweig,
    • Guillaume J. Filion,
    • Menzies Chen,
    • Joke G. van Bemmel,
    • and Trey Ideker
    Genome Res. February 2010 20: 190-200; Published in Advance December 9, 2009, doi:10.1101/gr.098822.109

  • Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading

    • Heather K. MacAlpine,
    • Raluca Gordân,
    • Sara K. Powell,
    • Alexander J. Hartemink,
    • and David M. MacAlpine
    Genome Res. February 2010 20: 201-211; Published in Advance December 7, 2009, doi:10.1101/gr.097873.109

  • Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

    • Jian Lu and
    • Andrew G. Clark
    Genome Res. February 2010 20: 212-227; Published in Advance November 30, 2009, doi:10.1101/gr.095406.109

  • Nucleosome landscape and control of transcription in the human malaria parasite

    • Nadia Ponts,
    • Elena Y. Harris,
    • Jacques Prudhomme,
    • Ivan Wick,
    • Colleen Eckhardt-Ludka,
    • Glenn R. Hicks,
    • Gary Hardiman,
    • Stefano Lonardi,
    • and Karine G. Le Roch
    Genome Res. February 2010 20: 228-238; Published in Advance January 6, 2010, doi:10.1101/gr.101063.109

  • High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe

    • Yabin Guo and
    • Henry L. Levin
    Genome Res. February 2010 20: 239-248; Published in Advance December 29, 2009, doi:10.1101/gr.099648.109

Methods

  • A new strategy for genome assembly using short sequence reads and reduced representation libraries

    • Andrew L. Young,
    • Hatice Ozel Abaan,
    • Daniel Zerbino,
    • James C. Mullikin,
    • Ewan Birney,
    • and Elliott H. Margulies
    Genome Res. February 2010 20: 249-256; doi:10.1101/gr.097956.109

  • Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

    • Michiel J.L. de Hoon,
    • Ryan J. Taft,
    • Takehiro Hashimoto,
    • Mutsumi Kanamori-Katayama,
    • Hideya Kawaji,
    • Mitsuoki Kawano,
    • Mami Kishima,
    • Timo Lassmann,
    • Geoffrey J. Faulkner,
    • John S. Mattick,
    • Carsten O. Daub,
    • Piero Carninci,
    • Jun Kawai,
    • Harukazu Suzuki,
    • and Yoshihide Hayashizaki
    Genome Res. February 2010 20: 257-264; Published in Advance January 5, 2010, doi:10.1101/gr.095273.109
    OPEN ACCESS ARTICLE

Resource

  • De novo assembly of human genomes with massively parallel short read sequencing

    • Ruiqiang Li,
    • Hongmei Zhu,
    • Jue Ruan,
    • Wubin Qian,
    • Xiaodong Fang,
    • Zhongbin Shi,
    • Yingrui Li,
    • Shengting Li,
    • Gao Shan,
    • Karsten Kristiansen,
    • Songgang Li,
    • Huanming Yang,
    • Jian Wang,
    • and Jun Wang
    Genome Res. February 2010 20: 265-272; Published in Advance December 17, 2009, doi:10.1101/gr.097261.109

  • A SNP discovery method to assess variant allele probability from next-generation resequencing data

    • Yufeng Shen,
    • Zhengzheng Wan,
    • Cristian Coarfa,
    • Rafal Drabek,
    • Lei Chen,
    • Elizabeth A. Ostrowski,
    • Yue Liu,
    • George M. Weinstock,
    • David A. Wheeler,
    • Richard A. Gibbs,
    • and Fuli Yu
    Genome Res. February 2010 20: 273-280; Published in Advance December 17, 2009, doi:10.1101/gr.096388.109
    OPEN ACCESS ARTICLE

  • A high-resolution association mapping panel for the dissection of complex traits in mice

    • Brian J. Bennett,
    • Charles R. Farber,
    • Luz Orozco,
    • Hyun Min Kang,
    • Anatole Ghazalpour,
    • Nathan Siemers,
    • Michael Neubauer,
    • Isaac Neuhaus,
    • Roumyana Yordanova,
    • Bo Guan,
    • Amy Truong,
    • Wen-pin Yang,
    • Aiqing He,
    • Paul Kayne,
    • Peter Gargalovic,
    • Todd Kirchgessner,
    • Calvin Pan,
    • Lawrence W. Castellani,
    • Emrah Kostem,
    • Nicholas Furlotte,
    • Thomas A. Drake,
    • Eleazar Eskin,
    • and Aldons J. Lusis
    Genome Res. February 2010 20: 281-290; Published in Advance January 6, 2010, doi:10.1101/gr.099234.109
|

This Issue

February 2010; 20 (2)
Cover
  1. Article
  2. Letter
  3. Methods
  4. Resource

Find articles in this issue containing these words:

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research