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Table of Contents
September 2003; 13 (9)
REVIEW
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The Unusual Phylogenetic Distribution of Retrotransposons: A Hypothesis
Jef D. Boeke
Genome Res.
September 2003
13
:
1975
-
1983
;
doi:
10.1101/gr.1392003
Abstract
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ARTICLES
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Retrotransposons and Their Recognition of pol II Promoters: A Comprehensive Survey of the Transposable Elements From the Complete Genome Sequence of
Schizosaccharomyces pombe
Nathan J. Bowen
,
I. King Jordan
,
Jonathan A. Epstein
,
Valerie Wood
,
and
Henry L. Levin
Genome Res.
September 2003
13
:
1984
-
1997
;
doi:
10.1101/gr.1191603
Abstract
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The Human Transcriptome Map Reveals Extremes in Gene Density, Intron Length, GC Content, and Repeat Pattern for Domains of Highly and Weakly Expressed Genes
Rogier Versteeg,
,
Barbera D.C. van Schaik
,
Marinus F. van Batenburg
,
Marco Roos
,
Ramin Monajemi
,
Huib Caron
,
Harmen J. Bussemaker
,
and
Antoine H.C. van Kampen
Genome Res.
September 2003
13
:
1998
-
2004
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1649303
Abstract
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Supplemental Research Data
Supplemental Research Data 3
Supplemental Research Data 4
Supplemental Research Data 5
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Sixty Alleles of the
ALS7
Open Reading Frame in
Candida albicans
:
ALS7
Is a Hypermutable Contingency Locus
Ningxin Zhang
,
Annette L. Harrex
,
Barbara R. Holland
,
Lauren E. Fenton
,
Richard D. Cannon
,
and
Jan Schmid
Genome Res.
September 2003
13
:
2005
-
2017
;
doi:
10.1101/gr.1024903
Abstract
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LETTERS
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Application of DNA Microarrays to Study the Evolutionary Genomics of
Yersinia pestis
and
Yersinia pseudotuberculosis
Stewart J. Hinchliffe
,
Karen E. Isherwood
,
Richard A. Stabler
,
Michael B. Prentice
,
Alexander Rakin
,
Richard A. Nichols
,
Petra C.F. Oyston
,
Jason Hinds
,
Richard W. Titball
,
and
Brendan W. Wren
Genome Res.
September 2003
13
:
2018
-
2029
;
doi:
10.1101/gr.1507303
Abstract
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Conserved Noncoding Sequences in the Grasses
Dan Choffnes Inada
,
Ali Bashir
,
Chunghau Lee
,
Brian C. Thomas
,
Cynthia Ko
,
Stephen A. Goff
,
and
Michael Freeling
Genome Res.
September 2003
13
:
2030
-
2041
;
doi:
10.1101/gr.1280703
Abstract
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Supplemental Research Data
Supplemental Research Data
Supplemental Research Data
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Widespread Selection for Local RNA Secondary Structure in Coding Regions of Bacterial Genes
Luba Katz
and
Christopher B. Burge
Genome Res.
September 2003
13
:
2042
-
2051
;
doi:
10.1101/gr.1257503
Abstract
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Asymmetric Sequence Divergence of Duplicate Genes
Gavin C. Conant
and
Andreas Wagner
Genome Res.
September 2003
13
:
2052
-
2058
;
doi:
10.1101/gr.1252603
Abstract
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Neocentromeres in 15q24-26 Map to Duplicons Which Flanked an Ancestral Centromere in 15q25
Mario Ventura
,
Jonathan M. Mudge
,
Valeria Palumbo
,
Sally Burn
,
Elisabeth Blennow
,
Mauro Pierluigi
,
Roberto Giorda
,
Orsetta Zuffardi
,
Nicoletta Archidiacono
,
Michael S. Jackson
,
and
Mariano Rocchi
Genome Res.
September 2003
13
:
2059
-
2068
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1155103
Abstract
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A General Approach for Identifying Distant Regulatory Elements Applied to the
Gdf6
Gene
Douglas P. Mortlock
,
Catherine Guenther
,
and
David M. Kingsley
Genome Res.
September 2003
13
:
2069
-
2081
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1306003
Abstract
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Pleiotropy, Homeostasis, and Functional Networks Based on Assays of Cardiovascular Traits in Genetically Randomized Populations
Joseph H. Nadeau
,
Lindsay C. Burrage
,
Joe Restivo
,
Yoh-Han Pao
,
Gary Churchill
,
and
Brian D. Hoit
Genome Res.
September 2003
13
:
2082
-
2091
;
doi:
10.1101/gr.1186603
Abstract
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Transcriptional Response of Lymphoblastoid Cells to Ionizing Radiation
Kuang-Yu Jen
and
Vivian G. Cheung
Genome Res.
September 2003
13
:
2092
-
2100
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1240103
Abstract
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Global Haplotype Diversity in the Human Insulin Gene Region
John D.H. Stead
,
Matthew E. Hurles
,
and
Alec J. Jeffreys
Genome Res.
September 2003
13
:
2101
-
2111
;
doi:
10.1101/gr.948003
Abstract
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Haplotype Information and Linkage Disequilibrium Mapping for Single Nucleotide Polymorphisms
Xin Lu
,
Tianhua Niu
,
and
Jun S. Liu
Genome Res.
September 2003
13
:
2112
-
2117
;
doi:
10.1101/gr.586803
Abstract
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Assessment of Genome-Wide Protein Function Classification for
Drosophila melanogaster
Huaiyu Mi
,
Jody Vandergriff
,
Michael Campbell
,
Apurva Narechania
,
William Majoros
,
Suzanna Lewis
,
Paul D. Thomas
,
and
Michael Ashburner
Genome Res.
September 2003
13
:
2118
-
2128
;
doi:
10.1101/gr.771603
Abstract
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Methods
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PANTHER: A Library of Protein Families and Subfamilies Indexed by Function
Paul D. Thomas
,
Michael J. Campbell
,
Anish Kejariwal
,
Huaiyu Mi
,
Brian Karlak
,
Robin Daverman
,
Karen Diemer
,
Anushya Muruganujan
,
and
Apurva Narechania
Genome Res.
September 2003
13
:
2129
-
2141
;
doi:
10.1101/gr.772403
Abstract
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Whole-Genome Shotgun Optical Mapping of
Rhodobacter sphaeroides
strain 2.4.1 and Its Use for Whole-Genome Shotgun Sequence Assembly
Shiguo Zhou
,
Erika Kvikstad
,
Andrew Kile
,
Jessica Severin
,
Dan Forrest
,
Rod Runnheim
,
Chris Churas
,
Jason W. Hickman
,
Chris Mackenzie
,
Madhusudan Choudhary
,
Timothy Donohue
,
Samuel Kaplan
,
and
David C. Schwartz
Genome Res.
September 2003
13
:
2142
-
2151
;
doi:
10.1101/gr.1128803
Abstract
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Locating Sequence on FPC Maps and Selecting a Minimal Tiling Path
Friedrich W. Engler
,
James Hatfield
,
William Nelson
,
and
Carol A. Soderlund
Genome Res.
September 2003
13
:
2152
-
2163
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1068603
Abstract
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PCAP: A Whole-Genome Assembly Program
Xiaoqiu Huang
,
Jianmin Wang
,
Srinivas Aluru
,
Shiaw-Pyng Yang
,
and
LaDeana Hillier
Genome Res.
September 2003
13
:
2164
-
2170
;
doi:
10.1101/gr.1390403
Abstract
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A Sensitive Method for Detecting Variation in Copy Numbers of Duplicated Genes
Gerli Pielberg
,
Andy E. Day
,
Graham S. Plastow
,
and
Leif Andersson
Genome Res.
September 2003
13
:
2171
-
2177
;
doi:
10.1101/gr.1188203
Abstract
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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
Li Li
,
Christian J. Stoeckert, Jr.
,
and
David S. Roos
Genome Res.
September 2003
13
:
2178
-
2189
;
doi:
10.1101/gr.1224503
Abstract
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A New Method for Rapidly Generating Gene-Targeting Vectors by Engineering BACs Through Homologous Recombination in Bacteria
Vinícius Cotta-de-Almeida
,
Susan Schonhoff
,
Tomoyuki Shibata
,
Andrew Leiter
,
and
Scott B. Snapper
Genome Res.
September 2003
13
:
2190
-
2194
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1356503
Abstract
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RESOURCE
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GANESH: Software for Customized Annotation of Genome Regions
Derek Huntley
,
Holger Hummerich
,
Damian Smedley
,
Sasivimol Kittivoravitkul
,
Mark McCarthy
,
Peter Little
,
and
Marek Sergot
Genome Res.
September 2003
13
:
2195
-
2202
;
doi:
10.1101/gr.698103
Abstract
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RESOURCE
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Transcript Mapping and Genome Annotation of Ascidian mtDNA Using EST Data
Carmela Gissi
and
Graziano Pesole
Genome Res.
September 2003
13
:
2203
-
2212
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1227803
Abstract
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September 2003;
13
(9)
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