Table of Contents

ARTICLES

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Integrated Mapping, Chromosomal Sequencing and Sequence Analysis of Cryptosporidium parvum
- Alan T. Bankier,
- Helen F. Spriggs,
- Berthold Fartmann,
- Bernard A. Konfortov,
- Martin Madera,
- Christine Vogel,
- Sarah A. Teichmann,
- Al Ivens,
- and Paul H. Dear
Genome Res. August 2003 13: 1787-1799; Published in Advance July 17, 2003, doi:10.1101/gr.1555203
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Tropheryma whipplei Twist: A Human Pathogenic Actinobacteria With a Reduced Genome
- Didier Raoult,
- Hiroyuki Ogata,
- Stéphane Audic,
- Catherine Robert,
- Karsten Suhre,
- Michel Drancourt,
- and Jean-Michel Claverie
Genome Res. August 2003 13: 1800-1809; doi:10.1101/gr.1474603

Methods

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Biopipe: A Flexible Framework for Protocol-Based Bioinformatics Analysis
- Shawn Hoon,
- Kiran Kumar Ratnapu,
- Jer-ming Chia,
- Balamurugan Kumarasamy,
- Xiao Juguang,
- Michele Clamp,
- Arne Stabenau,
- Simon Potter,
- Laura Clarke,
- and Elia Stupka
Genome Res. August 2003 13: 1904-1915; Published in Advance July 17, 2003, doi:10.1101/gr.1363103
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Estimating the Repeat Structure and Length of DNA Sequences Using ℓ-Tuples
- Xiaoman Li and
- Michael S. Waterman
Genome Res. August 2003 13: 1916-1922; doi:10.1101/gr.1251803
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Dragon Gene Start Finder: An Advanced System for Finding Approximate Locations of the Start of Gene Transcriptional Units
- Vladimir B. Bajic and
- Seng Hong Seah
Genome Res. August 2003 13: 1923-1929; Published in Advance July 17, 2003, doi:10.1101/gr.869803
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Gene Prediction by Spectral Rotation Measure: A New Method for Identifying Protein-Coding Regions
- Daniel Kotlar and
- Yizhar Lavner
Genome Res. August 2003 13: 1930-1937; Published in Advance July 17, 2003, doi:10.1101/gr.1261703
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E. coli Selection of Human Genes Encoding Secreted and Membrane Proteins Based on cDNA Fusions to a Leaderless β-Lactamase Reporter
- Ruoying Tan,
- Xin Jiang,
- Alan Jackson,
- Pei Jin,
- Junming Yang,
- Ernestine Lee,
- Brendan Duggan,
- Laura L. Stuve,
- and Glenn K. Fu
Genome Res. August 2003 13: 1938-1943; Published in Advance July 17, 2003, doi:10.1101/gr.1000903
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Detection and Assignment of Mutations and Minihaplotypes in Human DNA Using Peptide Mass Signature Genotyping (PMSG): Application to the Human RDS/Peripherin Gene
- Cheryl A. Telmer,
- Adam R. Retchless,
- Ashley D. Kinsey,
- Yvette Conley,
- Brian Rigatti,
- Michael B. Gorin,
- and Jonathan W. Jarvik
Genome Res. August 2003 13: 1944-1951; doi:10.1101/gr.995103
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Automated Detection of Informative Combined Effects in Genetic Association Studies of Complex Traits
- Nadia Tahri-Daizadeh,
- David-Alexandre Tregouet,
- Viviane Nicaud,
- Nicolas Manuel,
- François Cambien,
- and Laurence Tiret
Genome Res. August 2003 13: 1952-1960; doi:10.1101/gr.1254203
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Expanding the Use of Zymography by the Chemical Linkage of Small, Defined Substrates to the Gel Matrix
- Vladimir R. Kaberdin and
- Kenneth J. McDowall
Genome Res. August 2003 13: 1961-1965; doi:10.1101/gr.1277303

RESOURCE

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A Cattle–Human Comparative Map Built with Cattle BAC-Ends and Human Genome Sequence
- Denis M. Larkin,
- Annelie Everts-van der Wind,
- Mark Rebeiz,
- Peter A. Schweitzer,
- Sharon Bachman,
- Cheryl Green,
- Chris L. Wright,
- Edhilvia J. Campos,
- Leslie D. Benson,
- Jennifer Edwards,
- Lei Liu,
- Kazutoyo Osoegawa,
- James E. Womack,
- Pieter J. de Jong,
- and Harris A. Lewin
Genome Res. August 2003 13: 1966-1972; doi:10.1101/gr.1560203

ERRATUM

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Correction for Volume 13, p. 1111
Genome Res. August 2003 13: 1973

ARTICLES

Integrated Mapping, Chromosomal Sequencing and Sequence Analysis of Cryptosporidium parvum

Tropheryma whipplei Twist: A Human Pathogenic Actinobacteria With a Reduced Genome

LETTERS

Natural Genomic Design in Sinorhizobium meliloti: Novel Genomic Architectures

Comparative DNA Sequence Analysis of Wheat and Rice Genomes

A Gene Recommender Algorithm to Identify Coexpressed Genes in C. elegans

Prediction of Cell Type-Specific Gene Modules: Identification and Initial Characterization of a Core Set of Smooth Muscle-Specific Genes

Allelic Variation in Gene Expression Is Common in the Human Genome

Decay Rates of Human mRNAs: Correlation With Functional Characteristics and Sequence Attributes

A Population Threshold for Functional Polymorphisms

The Origin of Human Chromosome 1 and Its Homologs in Placental Mammals

Sequence Divergence Within Transposable Element Families in the Drosophila melanogaster Genome

Effects of Recombination Rate and Gene Density on Transposable Element Distributions in Arabidopsis thaliana

Methods

Biopipe: A Flexible Framework for Protocol-Based Bioinformatics Analysis

Estimating the Repeat Structure and Length of DNA Sequences Using ℓ-Tuples

Dragon Gene Start Finder: An Advanced System for Finding Approximate Locations of the Start of Gene Transcriptional Units

Gene Prediction by Spectral Rotation Measure: A New Method for Identifying Protein-Coding Regions

E. coli Selection of Human Genes Encoding Secreted and Membrane Proteins Based on cDNA Fusions to a Leaderless β-Lactamase Reporter

Detection and Assignment of Mutations and Minihaplotypes in Human DNA Using Peptide Mass Signature Genotyping (PMSG): Application to the Human RDS/Peripherin Gene

Automated Detection of Informative Combined Effects in Genetic Association Studies of Complex Traits

Expanding the Use of Zymography by the Chemical Linkage of Small, Defined Substrates to the Gel Matrix

RESOURCE

A Cattle–Human Comparative Map Built with Cattle BAC-Ends and Human Genome Sequence

ERRATUM

Correction for Volume 13, p. 1111

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