Table of Contents

May 2003; 13 (5)

ARTICLES

  • The Organization and Rate of Evolution of Wheat Genomes Are Correlated With Recombination Rates Along Chromosome Arms

    • Eduard D. Akhunov,
    • Andrew W. Goodyear,
    • Shu Geng,
    • Li-Li Qi,
    • Benjamin Echalier,
    • Bikram S. Gill,
    • Miftahudin,
    • J. Perry Gustafson,
    • Gerard Lazo,
    • Shiaoman Chao,
    • Olin D. Anderson,
    • Anna M. Linkiewicz,
    • Jorge Dubcovsky,
    • Mauricio La Rota,
    • Mark E. Sorrells,
    • Deshui Zhang,
    • Henry T. Nguyen,
    • Venugopal Kalavacharla,
    • Khwaja Hossain,
    • Shahryar F. Kianian,
    • Junhua Peng,
    • Nora L.V. Lapitan,
    • Jose L. Gonzalez-Hernandez,
    • James A. Anderson,
    • Dong-Woog Choi,
    • Timothy J. Close,
    • Muharrem Dilbirligi,
    • Kulvinder S. Gill,
    • M. Kay Walker-Simmons,
    • Camille Steber,
    • Patrick E. McGuire,
    • Calvin O. Qualset,
    • and Jan Dvorak
    Genome Res. May 1, 2003 13: 753-763; Published in Advance April 14, 2003, doi:10.1101/gr.808603

  • Comparative Analysis of Vertebrate Dystrophin Loci Indicate Intron Gigantism as a Common Feature

    • Uberto Pozzoli,
    • Greg Elgar,
    • Rachele Cagliani,
    • Laura Riva,
    • Giacomo P. Comi,
    • Nereo Bresolin,
    • Alessandra Bardoni,
    • and Manuela Sironi
    Genome Res. May 1, 2003 13: 764-772; doi:10.1101/gr.776503

  • Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells

    • Ran Elkon,
    • Chaim Linhart,
    • Roded Sharan,
    • Ron Shamir,
    • and Yosef Shiloh
    Genome Res. May 1, 2003 13: 773-780; doi:10.1101/gr.947203

  • Complex Evolution of 7E Olfactory Receptor Genes in Segmental Duplications

    • Tera Newman and
    • Barbara J. Trask
    Genome Res. May 1, 2003 13: 781-793; doi:10.1101/gr.769003

LETTERS

  • Parallel Evolution by Gene Duplication in the Genomes of Two Unicellular Fungi

    • Austin L. Hughes and
    • Robert Friedman
    Genome Res. May 1, 2003 13: 794-799; doi:10.1101/gr.714603

  • Retroposed Copies of the HMG Genes: A Window to Genome Dynamics

    • Liora Z. Strichman-Almashanu,
    • Michael Bustin,
    • and David Landsman
    Genome Res. May 1, 2003 13: 800-812; doi:10.1101/gr.893803

  • Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes

    • Gregory M. Cooper,
    • Michael Brudno,
    • NISC Comparative Sequencing Program,
    • Eric D. Green,
    • Serafim Batzoglou,
    • and Arend Sidow
    Genome Res. May 1, 2003 13: 813-820; doi:10.1101/gr.1064503

  • Genome Size Evolution in Pufferfish: A Comparative Analysis of Diodontid and Tetraodontid Pufferfish Genomes

    • Daniel E. Neafsey and
    • Stephen R. Palumbi
    Genome Res. May 1, 2003 13: 821-830; doi:10.1101/gr.841703

  • Selection on Human Genes as Revealed by Comparisons to Chimpanzee cDNA

    • Ines Hellmann,
    • Sebastian Zöllner,
    • Wolfgang Enard,
    • Ingo Ebersberger,
    • Birgit Nickel,
    • and Svante Pääbo
    Genome Res. May 1, 2003 13: 831-837; doi:10.1101/gr.944903

  • Neutral Substitutions Occur at a Faster Rate in Exons Than in Noncoding DNA in Primate Genomes

    • Sankar Subramanian and
    • Sudhir Kumar
    Genome Res. May 1, 2003 13: 838-844; doi:10.1101/gr.1152803

  • Haplotype Structure, LD Blocks, and Uneven Recombination Within the LRP5 Gene

    • Rebecca C.J. Twells,
    • Charles A. Mein,
    • Michael S. Phillips,
    • J. Fred Hess,
    • Riitta Veijola,
    • Matthew Gilbey,
    • Matthew Bright,
    • Michael Metzker,
    • Benedicte A. Lie,
    • Amanda Kingsnorth,
    • Edward Gregory,
    • Yusuke Nakagawa,
    • Hywel Snook,
    • William Y.S. Wang,
    • Jennifer Masters,
    • Gillian Johnson,
    • Iain Eaves,
    • Joanna M.M. Howson,
    • David Clayton,
    • Heather J. Cordell,
    • Sarah Nutland,
    • Helen Rance,
    • Philippa Carr,
    • and John A. Todd
    Genome Res. May 1, 2003 13: 845-855; doi:10.1101/gr.563703

  • Predicting Human Minisatellite Polymorphism

    • France Denoeud,
    • Gilles Vergnaud,
    • and Gary Benson
    Genome Res. May 1, 2003 13: 856-867; Published in Advance April 14, 2003, doi:10.1101/gr.574403

  • Fidelity of the Methylation Pattern and Its Variation in the Genome

    • Toshikazu Ushijima,
    • Naoko Watanabe,
    • Eriko Okochi,
    • Atsushi Kaneda,
    • Takashi Sugimura,
    • and Kazuaki Miyamoto
    Genome Res. May 1, 2003 13: 868-874; doi:10.1101/gr.969603

  • Genomic Gene Clustering Analysis of Pathways in Eukaryotes

    • Jennifer M. Lee and
    • Erik L.L. Sonnhammer
    Genome Res. May 1, 2003 13: 875-882; Published in Advance April 14, 2003, doi:10.1101/gr.737703

METHODS

  • Discovering Novel cis-Regulatory Motifs Using Functional Networks

    • Laurence M. Ettwiller,
    • Johan Rung,
    • and Ewan Birney
    Genome Res. May 1, 2003 13: 883-895; doi:10.1101/gr.866403

  • Predicting Gene Function From Patterns of Annotation

    • Oliver D. King,
    • Rebecca E. Foulger,
    • Selina S. Dwight,
    • James V. White,
    • and Frederick P. Roth
    Genome Res. May 1, 2003 13: 896-904; Published in Advance April 14, 2003, doi:10.1101/gr.440803

  • Tn7-Based Genome-Wide Random Insertional Mutagenesis of Candida glabrata

    • Irene Castaño,
    • Rupinder Kaur,
    • Shihjung Pan,
    • Robert Cregg,
    • Alejandro De Las Peñas,
    • Nini Guo,
    • Matthew C. Biery,
    • Nancy L. Craig,
    • and Brendan P. Cormack
    Genome Res. May 1, 2003 13: 905-915; Published in Advance April 14, 2003, doi:10.1101/gr.848203

  • DASH-2: Flexible, Low-Cost, and High-Throughput SNP Genotyping by Dynamic Allele-Specific Hybridization on Membrane Arrays

    • Magnus Jobs,
    • W. Mathias Howell,
    • Linda Strömqvist,
    • Torsten Mayr,
    • and Anthony J. Brookes
    Genome Res. May 1, 2003 13: 916-924; doi:10.1101/gr.801103

  • Exo-Proofreading, A Versatile SNP Scoring Technology

    • Patrick Cahill,
    • Michele Bakis,
    • James Hurley,
    • Veena Kamath,
    • William Nielsen,
    • Dina Weymouth,
    • Josée Dupuis,
    • Lynn Doucette-Stamm,
    • and Douglas R. Smith
    Genome Res. May 1, 2003 13: 925-931; Published in Advance April 14, 2003, doi:10.1101/gr.939903

  • DNA Analysis by Fluorescence Quenching Detection

    • Ming Xiao and
    • Pui-Yan Kwok
    Genome Res. May 1, 2003 13: 932-939; doi:10.1101/gr.987803

  • Software for Automated Analysis of DNA Fingerprinting Gels

    • Daniel R. Fuhrmann,
    • Martin I. Krzywinski,
    • Readman Chiu,
    • Parvaneh Saeedi,
    • Jacqueline E. Schein,
    • Ian E. Bosdet,
    • Asif Chinwalla,
    • LaDeana W. Hillier,
    • Robert H. Waterston,
    • John D. McPherson,
    • Steven J.M. Jones,
    • and Marco A. Marra
    Genome Res. May 1, 2003 13: 940-953; doi:10.1101/gr.904303

  • Unbiased Whole-Genome Amplification Directly From Clinical Samples

    • Seiyu Hosono,
    • A. Fawad Faruqi,
    • Frank B. Dean,
    • Yuefen Du,
    • Zhenyu Sun,
    • Xiaohong Wu,
    • Jing Du,
    • Stephen F. Kingsmore,
    • Michael Egholm,
    • and Roger S. Lasken
    Genome Res. May 1, 2003 13: 954-964; Published in Advance April 14, 2003, doi:10.1101/gr.816903

  • Predicting Gene Ontology Biological Process From Temporal Gene Expression Patterns

    • Astrid Lægreid,
    • Torgeir R. Hvidsten,
    • Herman Midelfart,
    • Jan Komorowski,
    • and Arne K. Sandvik
    Genome Res. May 1, 2003 13: 965-979; Published in Advance April 14, 2003, doi:10.1101/gr.1144503

  • Selecting Open Reading Frames From DNA

    • Paola Zacchi,
    • Daniele Sblattero,
    • Fiorella Florian,
    • Roberto Marzari,
    • and Andrew R.M. Bradbury
    Genome Res. May 1, 2003 13: 980-990; doi:10.1101/gr.861503

  • Comparing Bacterial Genomes Through Conservation Profiles

    • Maria J. Martı́n,
    • Javier Herrero,
    • Alvaro Mateos,
    • and Joaquin Dopazo
    Genome Res. May 1, 2003 13: 991-998; Published in Advance April 14, 2003, doi:10.1101/gr.678303

  • LineUp: Statistical Detection of Chromosomal Homology With Application to Plant Comparative Genomics

    • Steve Hampson,
    • Aoife McLysaght,
    • Brandon Gaut,
    • and Pierre Baldi
    Genome Res. May 1, 2003 13: 999-1010; Published in Advance April 14, 2003, doi:10.1101/gr.814403

RESOURCES

  • In Situ-Synthesized Novel Microarray Optimized for Mouse Stem Cell and Early Developmental Expression Profiling

    • Mark G. Carter,
    • Toshio Hamatani,
    • Alexei A. Sharov,
    • Condie E. Carmack,
    • Yong Qian,
    • Kazuhiro Aiba,
    • Naomi T. Ko,
    • Dawood B. Dudekula,
    • Pius M. Brzoska,
    • S. Stuart Hwang,
    • and Minoru S.H. Ko
    Genome Res. May 1, 2003 13: 1011-1021; doi:10.1101/gr.878903

  • Analysis of 5′-End Sequences of Chimpanzee cDNAs

    • Ryuichi Sakate,
    • Naoki Osada,
    • Munetomo Hida,
    • Sumio Sugano,
    • Ikuo Hayasaka,
    • Naoko Shimohira,
    • Shinsuke Yanagi,
    • Yumiko Suto,
    • Katsuyuki Hashimoto,
    • and Momoki Hirai
    Genome Res. May 1, 2003 13: 1022-1026; doi:10.1101/gr.783103

ERRATA

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This Issue

May 2003; 13 (5)
Cover
  1. ARTICLES
  2. LETTERS
  3. METHODS
  4. RESOURCES
  5. ERRATA

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