Table of Contents

ARTICLES

Select this article
Regulatory Roles of Conserved Intergenic Domains in Vertebrate Dlx Bigene Clusters
- Noël Ghanem,
- Olga Jarinova,
- Angel Amores,
- Qiaoming Long,
- Gary Hatch,
- Byung Keon Park,
- John L.R. Rubenstein,
- and Marc Ekker
Genome Res. April 1, 2003 13: 533-543; doi:10.1101/gr.716103
Select this article
Comparative Evolutionary Genomics Unveils the Molecular Mechanism of Reassignment of the CTG Codon in Candida spp.
- Steven E. Massey,
- Gabriela Moura,
- Pedro Beltrão,
- Ricardo Almeida,
- James R. Garey,
- Mick F. Tuite,
- and Manuel A.S. Santos
Genome Res. April 1, 2003 13: 544-557; doi:10.1101/gr.811003
Select this article
Identification of Novel Imprinted Genes in a Genome-Wide Screen for Maternal Methylation
- Rachel J. Smith,
- Wendy Dean,
- Galia Konfortova,
- and Gavin Kelsey
Genome Res. April 1, 2003 13: 558-569; doi:10.1101/gr.781503

LETTERS

Select this article
Microarray Analyses of Xylella fastidiosa Provide Evidence of Coordinated Transcription Control of Laterally Transferred Elements
- Luiz R. Nunes,
- Yoko B. Rosato,
- Nair H. Muto,
- Giane M. Yanai,
- Vivian S. da Silva,
- Daniela B. Leite,
- Edmilson R. Gonçalves,
- Alessandra A. de Souza,
- Helvécio D. Coletta-Filho,
- Marcos A. Machado,
- Silvio A. Lopes,
- and Regina Costa de Oliveira
Genome Res. April 1, 2003 13: 570-578; doi:10.1101/gr.930803
Select this article
Homotypic Regulatory Clusters in Drosophila
- Alexander P. Lifanov,
- Vsevolod J. Makeev,
- Anna G. Nazina,
- and Dmitri A. Papatsenko
Genome Res. April 1, 2003 13: 579-588; doi:10.1101/gr.668403
Select this article
Species-Specific Class I Gene Expansions Formed the Telomeric 1 Mb of the Mouse Major Histocompatibility Complex
- Toyoyuki Takada,
- Attila Kumánovics,
- Claire Amadou,
- Masayasu Yoshino,
- Elsy P. Jones,
- Maria Athanasiou,
- Glen A. Evans,
- and Kirsten Fischer Lindahl
Genome Res. April 1, 2003 13: 589-600; doi:10.1101/gr.975303
Select this article
Data-Mining Approaches Reveal Hidden Families of Proteases in the Genome of Malaria Parasite
- Yimin Wu,
- Xiangyun Wang,
- Xia Liu,
- and Yufeng Wang
Genome Res. April 1, 2003 13: 601-616; doi:10.1101/gr.913403
Select this article
Nonrandom Tripeptide Sequence Distributions at Protein Carboxyl Termini
- Gregory J. Gatto, Jr. and
- Jeremy M. Berg
Genome Res. April 1, 2003 13: 617-623; doi:10.1101/gr.667603
Select this article
Y Chromosome STR Haplotypes and the Genetic Structure of U.S. Populations of African, European, and Hispanic Ancestry
- Manfred Kayser,
- Silke Brauer,
- Hiltrud Schädlich,
- Mechthild Prinz,
- Mark A. Batzer,
- Peter A. Zimmerman,
- B. A. Boatin,
- and Mark Stoneking
Genome Res. April 1, 2003 13: 624-634; doi:10.1101/gr.463003

METHODS

Select this article
Novel Multilocus Measure of Linkage Disequilibrium to Estimate Past Effective Population Size
- Ben J. Hayes,
- Peter M. Visscher,
- Helen C. McPartlan,
- and Mike E. Goddard
Genome Res. April 1, 2003 13: 635-643; Published in Advance March 12, 2003, doi:10.1101/gr.387103
Select this article
Chromosomal Deletion Formation System Based on Tn5 Double Transposition: Use For Making Minimal Genomes and Essential Gene Analysis
- Igor Y. Goryshin,
- Todd A. Naumann,
- Jennifer Apodaca,
- and William S. Reznikoff
Genome Res. April 1, 2003 13: 644-653; Published in Advance March 12, 2003, doi:10.1101/gr.611403
Select this article
Computationally Identifying Novel NF-κB-Regulated Immune Genes in the Human Genome
- Rongxiang Liu,
- Richard C. McEachin,
- and David J. States
Genome Res. April 1, 2003 13: 654-661; Published in Advance March 12, 2003, doi:10.1101/gr.911803
Select this article
The Gene Ontology Annotation (GOA) Project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro
- Evelyn Camon,
- Michele Magrane,
- Daniel Barrell,
- David Binns,
- Wolfgang Fleischmann,
- Paul Kersey,
- Nicola Mulder,
- Tom Oinn,
- John Maslen,
- Anthony Cox,
- and Rolf Apweiler
Genome Res. April 1, 2003 13: 662-672; Published in Advance March 12, 2003, doi:10.1101/gr.461403
Select this article
Ran's C-terminal, Basic Patch, and Nucleotide Exchange Mechanisms in Light of a Canonical Structure for Rab, Rho, Ras, and Ran GTPases
- Andrew F. Neuwald,
- Natarajan Kannan,
- Aleksandar Poleksic,
- Naoya Hata,
- and Jun S. Liu
Genome Res. April 1, 2003 13: 673-692; doi:10.1101/gr.862303
Select this article
Informatics for Unveiling Hidden Genome Signatures
- Takashi Abe,
- Shigehiko Kanaya,
- Makoto Kinouchi,
- Yuta Ichiba,
- Tokio Kozuki,
- and Toshimichi Ikemura
Genome Res. April 1, 2003 13: 693-702; doi:10.1101/gr.634603
Select this article
Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions
- Yuval Kluger,
- Ronen Basri,
- Joseph T. Chang,
- and Mark Gerstein
Genome Res. April 1, 2003 13: 703-716; doi:10.1101/gr.648603
Select this article
Efficient High-Throughput Resequencing of Genomic DNA
- Raymond D. Miller,
- Shenghui Duan,
- Elizabeth G. Lovins,
- Ellen F. Kloss,
- and Pui-Yan Kwok
Genome Res. April 1, 2003 13: 717-720; Published in Advance March 12, 2003, doi:10.1101/gr.886203
Select this article
LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
- Michael Brudno,
- Chuong B. Do,
- Gregory M. Cooper,
- Michael F. Kim,
- Eugene Davydov,
- NISC Comparative Sequencing Program,
- Eric D. Green,
- Arend Sidow,
- and Serafim Batzoglou
Genome Res. April 1, 2003 13: 721-731; Published in Advance March 12, 2003, doi:10.1101/gr.926603

RESOURCES

Select this article
GALA, a Database for Genomic Sequence Alignments and Annotations
- Belinda Giardine,
- Laura Elnitski,
- Cathy Riemer,
- Izabela Makalowska,
- Scott Schwartz,
- Webb Miller,
- and Ross C. Hardison
Genome Res. April 1, 2003 13: 732-741; doi:10.1101/gr.603103
Select this article
The First-Generation Whole-Genome Radiation Hybrid Map in the Horse Identifies Conserved Segments in Human and Mouse Genomes
- Bhanu P. Chowdhary,
- Terje Raudsepp,
- Srinivas R. Kata,
- Glenda Goh,
- Lee V. Millon,
- Veronica Allan,
- François Piumi,
- Gérard Guérin,
- June Swinburne,
- Matthew Binns,
- Teri L. Lear,
- Jim Mickelson,
- James Murray,
- Douglas F. Antczak,
- James E. Womack,
- and Loren C. Skow
Genome Res. April 1, 2003 13: 742-751; doi:10.1101/gr.917503

ARTICLES

Regulatory Roles of Conserved Intergenic Domains in Vertebrate Dlx Bigene Clusters

Comparative Evolutionary Genomics Unveils the Molecular Mechanism of Reassignment of the CTG Codon in Candida spp.

Identification of Novel Imprinted Genes in a Genome-Wide Screen for Maternal Methylation

LETTERS

Microarray Analyses of Xylella fastidiosa Provide Evidence of Coordinated Transcription Control of Laterally Transferred Elements

Homotypic Regulatory Clusters in Drosophila

Species-Specific Class I Gene Expansions Formed the Telomeric 1 Mb of the Mouse Major Histocompatibility Complex

Data-Mining Approaches Reveal Hidden Families of Proteases in the Genome of Malaria Parasite

Nonrandom Tripeptide Sequence Distributions at Protein Carboxyl Termini

Y Chromosome STR Haplotypes and the Genetic Structure of U.S. Populations of African, European, and Hispanic Ancestry

METHODS

Novel Multilocus Measure of Linkage Disequilibrium to Estimate Past Effective Population Size

Chromosomal Deletion Formation System Based on Tn5 Double Transposition: Use For Making Minimal Genomes and Essential Gene Analysis

Computationally Identifying Novel NF-κB-Regulated Immune Genes in the Human Genome

The Gene Ontology Annotation (GOA) Project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro

Ran's C-terminal, Basic Patch, and Nucleotide Exchange Mechanisms in Light of a Canonical Structure for Rab, Rho, Ras, and Ran GTPases

Informatics for Unveiling Hidden Genome Signatures

Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions

Efficient High-Throughput Resequencing of Genomic DNA

LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA

RESOURCES

GALA, a Database for Genomic Sequence Alignments and Annotations

The First-Generation Whole-Genome Radiation Hybrid Map in the Horse Identifies Conserved Segments in Human and Mouse Genomes

This Issue

Preprint Server

Current Issue

In This Issue