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Table of Contents
June 2003; 13 (6a)
PERSPECTIVE
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Genome Function and Nuclear Architecture: From Gene Expression to Nanoscience
Timothy P. O'Brien
,
Carol J. Bult
,
Christoph Cremer
,
Michael Grunze
,
Barbara B. Knowles
,
Jörg Langowski
,
James McNally
,
Thoru Pederson
,
Joan C. Politz
,
Ana Pombo
,
Günter Schmahl
,
Joachim P. Spatz
,
and
Roel van Driel
Genome Res.
June 2003
13
:
1029
-
1041
;
Published in Advance
May 12, 2003
,
doi:
10.1101/gr.946403
Abstract
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ARTICLES
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Genome Sequence of an M3 Strain of
Streptococcus pyogenes
Reveals a Large-Scale Genomic Rearrangement in Invasive Strains and New Insights into Phage Evolution
Ichiro Nakagawa
,
Ken Kurokawa
,
Atsushi Yamashita
,
Masanobu Nakata
,
Yusuke Tomiyasu
,
Nobuo Okahashi
,
Shigetada Kawabata
,
Kiyoshi Yamazaki
,
Tadayoshi Shiba
,
Teruo Yasunaga
,
Hideo Hayashi
,
Masahira Hattori
,
and
Shigeyuki Hamada
Genome Res.
June 2003
13
:
1042
-
1055
;
doi:
10.1101/gr.1096703
Abstract
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Supplemental Research Data
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New Evidence for Genome-Wide Duplications at the Origin of Vertebrates Using an Amphioxus Gene Set and Completed Animal Genomes
Georgia Panopoulou
,
Steffen Hennig
,
Detlef Groth
,
Antje Krause
,
Albert J. Poustka
,
Ralf Herwig
,
Martin Vingron
,
and
Hans Lehrach
Genome Res.
June 2003
13
:
1056
-
1066
;
doi:
10.1101/gr.874803
Abstract
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Supplemental Research Data
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Functional Divergence of Two Zebrafish Midkine Growth Factors Following Fish-Specific Gene Duplication
Christoph Winkler
,
Matthias Schäfer
,
Jutta Duschl
,
Manfred Schartl
,
and
Jean-Nicolas Volff
Genome Res.
June 2003
13
:
1067
-
1081
;
Published in Advance
May 12, 2003
,
doi:
10.1101/gr.1097503
Abstract
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LETTERS
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The Zebrafish Annexin Gene Family
Steven A. Farber
,
Robert A. De Rose
,
Eric S. Olson
,
and
Marnie E. Halpern
Genome Res.
June 2003
13
:
1082
-
1096
;
doi:
10.1101/gr.479603
Abstract
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Differential Expansion of Zinc-Finger Transcription Factor Loci in Homologous Human and Mouse Gene Clusters
Mark Shannon
,
Aaron T. Hamilton
,
Laurie Gordon
,
Elbert Branscomb
,
and
Lisa Stubbs
Genome Res.
June 2003
13
:
1097
-
1110
;
Published in Advance
May 12, 2003
,
doi:
10.1101/gr.963903
Abstract
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Evolutionary Conservation of Regulatory Elements in Vertebrate
Hox
Gene Clusters
Simona Santini
,
Jeffrey L. Boore
,
and
Axel Meyer
Genome Res.
June 2003
13
:
1111
-
1122
;
doi:
10.1101/gr.700503
Abstract
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Supplemental Research Data
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An Appraisal of the Potential for Illegitimate Recombination in Bacterial Genomes and Its Consequences: From Duplications to Genome Reduction
Eduardo P.C. Rocha
Genome Res.
June 2003
13
:
1123
-
1132
;
Published in Advance
May 12, 2003
,
doi:
10.1101/gr.966203
Abstract
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Supplemental Research Data
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Extrachromosomal Circular DNA of Tandemly Repeated Genomic Sequences in
Drosophila
Sarit Cohen
,
Keren Yacobi
,
and
Daniel Segal
Genome Res.
June 2003
13
:
1133
-
1145
;
doi:
10.1101/gr.907603
Abstract
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Multimeric Threading-Based Prediction of Protein–Protein Interactions on a Genomic Scale: Application to the
Saccharomyces cerevisiae
Proteome
Long Lu
,
Adrian K. Arakaki
,
Hui Lu
,
and
Jeffrey Skolnick
Genome Res.
June 2003
13
:
1146
-
1154
;
doi:
10.1101/gr.1145203
Abstract
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Phylogenetically Older Introns Strongly Correlate With Module Boundaries in Ancient Proteins
Alexei Fedorov
,
Scott Roy
,
Xiaohong Cao
,
and
Walter Gilbert
Genome Res.
June 2003
13
:
1155
-
1157
;
Published in Advance
May 12, 2003
,
doi:
10.1101/gr.1008203
Abstract
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The Pattern of Polymorphism on Human Chromosome 21
Hideki Innan
,
Badri Padhukasahasram
,
and
Magnus Nordborg
Genome Res.
June 2003
13
:
1158
-
1168
;
doi:
10.1101/gr.466303
Abstract
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Comparative Genome Organization of Human, Murine, and Feline MHC Class II Region
Naoya Yuhki
,
Thomas Beck
,
Robert M. Stephens
,
Yoko Nishigaki
,
Kymberly Newmann
,
and
Stephen J. O'Brien
Genome Res.
June 2003
13
:
1169
-
1179
;
Published in Advance
May 12, 2003
,
doi:
10.1101/gr.976103
Abstract
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Genome Analysis of
F. nucleatum sub spp vincentii
and Its Comparison With the Genome of
F. nucleatum
ATCC 25586
Vinayak Kapatral
,
Natalia Ivanova
,
Iain Anderson
,
Gary Reznik
,
Anamitra Bhattacharyya
,
Warren L. Gardner
,
Natalia Mikhailova
,
Alla Lapidus
,
Niels Larsen
,
Mark D'Souza
,
Theresa Walunas
,
Robert Haselkorn
,
Ross Overbeek
,
and
Nikos Kyrpides
Genome Res.
June 2003
13
:
1180
-
1189
;
doi:
10.1101/gr.566003
Abstract
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Methods
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Human–Mouse Gene Identification by Comparative Evidence Integration and Evolutionary Analysis
Lingang Zhang
,
Vladimir Pavlovic
,
Charles R Cantor
,
and
Simon Kasif
Genome Res.
June 2003
13
:
1190
-
1202
;
Published in Advance
May 12, 2003
,
doi:
10.1101/gr.703903
Abstract
Full Text
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Assessment of SAGE in Transcript Identification
Erin D. Pleasance
,
Marco A. Marra
,
and
Steven J.M. Jones
Genome Res.
June 2003
13
:
1203
-
1215
;
Published in Advance
May 12, 2003
,
doi:
10.1101/gr.873003
Abstract
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Computational Discovery of Internal Micro-Exons
Natalia Volfovsky
,
Brian J. Haas
,
and
Steven L. Salzberg
Genome Res.
June 2003
13
:
1216
-
1221
;
doi:
10.1101/gr.677503
Abstract
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Supplemental Research Data
RESOURCES
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eVOC: A Controlled Vocabulary for Unifying Gene Expression Data
Janet Kelso
,
Johann Visagie
,
Gregory Theiler
,
Alan Christoffels
,
Soraya Bardien
,
Damian Smedley
,
Darren Otgaar
,
Gary Greyling
,
C. Victor Jongeneel
,
Mark I. McCarthy
,
Tania Hide
,
and
Winston Hide
Genome Res.
June 2003
13
:
1222
-
1230
;
doi:
10.1101/gr.985203
Abstract
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Kinase Pathway Database: An Integrated Protein-Kinase and NLP-Based Protein-Interaction Resource
Asako Koike
,
Yoshiyuki Kobayashi
,
and
Toshihisa Takagi
Genome Res.
June 2003
13
:
1231
-
1243
;
doi:
10.1101/gr.835903
Abstract
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Internet Contig Explorer (iCE)—A Tool for Visualizing Clone Fingerprint Maps
Christopher D. Fjell
,
Ian Bosdet
,
Jacqueline E. Schein
,
Steven J.M. Jones
,
and
Marco A. Marra
Genome Res.
June 2003
13
:
1244
-
1249
;
doi:
10.1101/gr.819303
Abstract
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Large-Scale Identification and Analysis of Genome-Wide Single-Nucleotide Polymorphisms for Mapping in
Arabidopsis thaliana
Karl J. Schmid
,
Thomas Rosleff Sörensen
,
Ralf Stracke
,
Ottó Törjék
,
Thomas Altmann
,
Tom Mitchell-Olds
,
and
Bernd Weisshaar
Genome Res.
June 2003
13
:
1250
-
1257
;
doi:
10.1101/gr.728603
Abstract
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ERRATA
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Correction for Volume 13, p. 742
Genome Res.
June 2003
13
:
1258
Extract
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Correction for Volume 13, p. 794
Genome Res.
June 2003
13
:
1258
Extract
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June 2003;
13
(6a)
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