Table of Contents

Research

• • Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection

    • Jian-Hai Chen
    • Patrick Landback
    • Deanna Arsala
    • Alexander Guzzetta
    • Shengqian Xia
    • Jared Atlas Dylan Sosa
    • ...[+2 authors]...,
    • Yong E. Zhang
    • Jingqiu Cheng
    • Bairong Shen
    • Manyuan Long

    • First Published February 14, 2025

  • Estrogen-induced chromatin looping changes identify a subset of functional regulatory elements

    • Hosiana Abewe
    • Alexandra Richey
    • Jeffery M. Vahrenkamp
    • Matthew Ginley-Hidinger
    • Craig M. Rush

    • First Published March 3, 2025

  • Nucleosome binding by TP53, TP63, and TP73 is determined by the composition, accessibility, and helical orientation of their binding sites

    • Patrick D. Wilson
    • Xinyang Yu
    • Christopher R. Handelmann
    • Michael J. Buck

    • First Published February 10, 2025

  • KRAB zinc-finger proteins regulate endogenous retroviruses to sculpt germline transcriptomes and genome evolution

    • Kai Otsuka
    • Akihiko Sakashita
    • So Maezawa
    • Richard M. Schultz
    • Satoshi H. Namekawa

    • First Published March 12, 2025

  • Ancient dog introgression into the Iberian wolf genome may have facilitated adaptation to human-dominated landscapes

    • Diana Lobo
    • Hernán E. Morales
    • Cock Van Oosterhout
    • José Vicente López-Bao
    • Pedro Silva
    • Luis Llaneza Carolina Pacheco Diana Castro Germán Hernández-Alonso George Pacheco
    • ...[+5 authors]...,
    • John Archer
    • M. Thomas P. Gilbert
    • Nuno Ferrand
    • Raquel Godinho

    • First Published February 14, 2025

  • Variation in the fitness impact of translationally optimal codons among animals

    • Florian Bénitière
    • Tristan Lefébure
    • Laurent Duret

    • First Published February 10, 2025

  • Vertebrates show coordinated elevated expression of mitochondrial and nuclear genes after birth

    • Hadar Medini
    • Dan Mishmar

    • First Published March 4, 2025

  • The role of transposon activity in shaping cis-regulatory element evolution after whole-genome duplication

    • Øystein Monsen
    • Lars Grønvold
    • Alex Datsomor
    • Thomas Harvey
    • James Kijas

    • First Published February 12, 2025

  • Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly

    • Kang Du
    • Oliver Deusch
    • Ilja Bezrukov
    • Christa Lanz
    • Yann Guiguen
    • Margarete Hoffmann
    • ...[+1 authors]...,
    • Anette Habring
    • Detlef Weigel
    • Manfred Schartl
    • Christine Dreyer

    • First Published March 5, 2025

  • The genomic consequences and persistence of sociality in spiders

    • Jilong Ma
    • Jesper Bechsgaard
    • Anne Aagaard
    • Palle Villesen
    • Trine Bilde

    • First Published February 20, 2025

  • Transcriptomic and proteomic effects of gene deletion are not evolutionarily conserved

    • Yang Li
    • Jianzhi Zhang

    • First Published February 18, 2025

  • Atypical epigenetic and small RNA control of degenerated transposons and their fragments in clonally reproducing Spirodela polyrhiza

    • Rodolphe Dombey
    • Daniel Buendía-Ávila
    • Verónica Barragán-Borrero
    • Laura Diezma-Navas
    • Arturo Ponce-Mañe

    • First Published March 4, 2025