Volume 34, Issue 4 | April 2024

Review
- - Navigating the landscape of epitranscriptomics and host immunity
    Elaine Huang
    Clara Frydman
    Xinshu Xiao
    First Published May 3, 2024
Perspective
- - Ribosome decision graphs for the representation of eukaryotic RNA translation complexity
    Jack A.S. Tierney
    Michał Świrski
    Håkon Tjeldnes
    Jonathan M. Mudge
    Joanna Kufel
    First Published May 7, 2024
Research
- - Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions
    Stacey E.P. Joosten
    Sebastian Gregoricchio
    Suzan Stelloo
    Elif Yapıcı
    Chia-Chi Flora Huang
    Kerim Yavuz Maria Donaldson Collier Tunç Morova Umut Berkay Altintaş Yongsoo Kim Sander Canisius Cathy B. Moelans Paul J. van Diest Gozde Korkmaz
    ...[+9 authors]...,
    Nathan A. Lack
    Michiel Vermeulen
    Sabine C. Linn
    Wilbert Zwart
    First Published May 6, 2024
  - Suv39h-catalyzed H3K9me3 is critical for euchromatic genome organization and the maintenance of gene transcription
    Christine R. Keenan
    Hannah D. Coughlan
    Nadia Iannarella
    Andres Tapia del Fierro
    Andrew Keniry
    Timothy M. Johanson Wing Fuk Chan Alexandra L. Garnham
    ...[+3 authors]...,
    Lachlan W. Whitehead
    Marnie E. Blewitt
    Gordon K. Smyth
    Rhys S. Allan
    First Published May 6, 2024
  - Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy
    Dhanur P. Iyer
    Lambert Moyon
    Lars Wittler
    Chieh-Yu Cheng
    Francisca R. Ringeling
    First Published May 6, 2024
  - Transcriptional programs mediating neuronal toxicity and altered glial–neuronal signaling in a Drosophila knock-in tauopathy model
    Hassan Bukhari
    Vanitha Nithianandam
    Rachel A. Battaglia
    Anthony Cicalo
    Souvarish Sarkar
    Aram Comjean
    ...[+1 authors]...,
    Yanhui Hu
    Matthew J. Leventhal
    Xianjun Dong
    Mel B. Feany
    First Published April 10, 2024
  - Plant genome evolution in the genus Eucalyptus is driven by structural rearrangements that promote sequence divergence
    Scott Ferguson
    Ashley Jones
    Kevin Murray
    Rose Andrew
    Benjamin Schwessinger
    First Published April 8, 2024
Methods
- - Probabilistic association of differentially expressed genes with cis-regulatory elements
    Brian S. Roberts
    Ashlyn G. Anderson
    E. Christopher Partridge
    Gregory M. Cooper
    Richard M. Myers
    First Published April 17, 2024
  - Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples
    Shuangxi Ji
    Tong Zhu
    Ankit Sethia
    Wenyi Wang
    First Published April 8, 2024
  - A new framework for exploratory network mediator analysis in omics data
    Qingpo Cai
    Yinghao Fu
    Cheng Lyu
    Zihe Wang
    Shun Rao
    First Published May 7, 2024

Table of Contents

Volume 34, Issue 4 | April 2024

Review

Navigating the landscape of epitranscriptomics and host immunity

Perspective

Ribosome decision graphs for the representation of eukaryotic RNA translation complexity

Research

Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions

Suv39h-catalyzed H3K9me3 is critical for euchromatic genome organization and the maintenance of gene transcription

Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy

Transcriptional programs mediating neuronal toxicity and altered glial–neuronal signaling in a Drosophila knock-in tauopathy model

Plant genome evolution in the genus Eucalyptus is driven by structural rearrangements that promote sequence divergence

Methods

Probabilistic association of differentially expressed genes with cis-regulatory elements

Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples

A new framework for exploratory network mediator analysis in omics data

Table of Contents

Volume 34, Issue 4 | April 2024

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Review

Perspective

Research

Methods