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  Deciphering D4Z4 CpG methylation gradients in fascioscapulohumeral muscular dystrophy using nanopore sequencing

  • Russell J. Butterfield,
  • Diane M. Dunn,
  • Brett Duval,
  • Sarah Moldt,
  • and Robert B. Weiss

  Genome Res. September 2023 33: 1439-1454; Published in Advance October 5, 2023, doi:10.1101/gr.277871.123
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  The rate of de novo structural variation is increased in in vitro–produced offspring and preferentially affects the paternal genome

  • Young-Lim Lee,
  • Aniek C. Bouwman,
  • Chad Harland,
  • Mirte Bosse,
  • Gabriel Costa Monteiro Moreira,
  • Roel F. Veerkamp,
  • Erik Mullaart,
  • Nadine Cambisano,
  • Martien A.M. Groenen,
  • Latifa Karim,
  • Wouter Coppieters,
  • Michel Georges,
  • and Carole Charlier

  Genome Res. September 2023 33: 1455-1464; Published in Advance October 4, 2023, doi:10.1101/gr.277884.123
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  Locus-resolution analysis of L1 regulation and retrotransposition potential in mouse embryonic development

  • Patricia Gerdes,
  • Dorothy Chan,
  • Mischa Lundberg,
  • Francisco J. Sanchez-Luque,
  • Gabriela O. Bodea,
  • Adam D. Ewing,
  • Geoffrey J. Faulkner,
  • and Sandra R. Richardson

  Genome Res. September 2023 33: 1465-1481; Published in Advance October 5, 2023, doi:10.1101/gr.278003.123
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  ZSWIM8 destabilizes many murine microRNAs and is required for proper embryonic growth and development

  • Charlie Y. Shi,
  • Lara E. Elcavage,
  • Raghu R. Chivukula,
  • Joanna Stefano,
  • Benjamin Kleaveland,
  • and David P. Bartel

  Genome Res. September 2023 33: 1482-1496; Published in Advance August 2, 2023, doi:10.1101/gr.278073.123
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  The predicted RNA-binding protein regulome of axonal mRNAs

  • Raphaëlle Luisier,
  • Catia Andreassi,
  • Lisa Fournier,
  • and Antonella Riccio

  Genome Res. September 2023 33: 1497-1512; Published in Advance August 15, 2023, doi:10.1101/gr.277804.123
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  Phylogenetic modeling of enhancer shifts in African mole-rats reveals regulatory changes associated with tissue-specific traits

  • Elise Parey,
  • Diego Fernandez-Aroca,
  • Stephanie Frost,
  • Ainhoa Uribarren,
  • Thomas J. Park,
  • Markus Zöttl,
  • Ewan St. John Smith,
  • Camille Berthelot,
  • and Diego Villar

  Genome Res. September 2023 33: 1513-1526; Published in Advance August 25, 2023, doi:10.1101/gr.277715.123
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  Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization

  • Kazuaki Yamaguchi,
  • Yoshinobu Uno,
  • Mitsutaka Kadota,
  • Osamu Nishimura,
  • Ryo Nozu,
  • Kiyomi Murakumo,
  • Rui Matsumoto,
  • Keiichi Sato,
  • and Shigehiro Kuraku

  Genome Res. September 2023 33: 1527-1540; Published in Advance August 17, 2023, doi:10.1101/gr.276840.122
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  Transposons contribute to the functional diversification of the head, gut, and ovary transcriptomes across Drosophila natural strains

  • Marta Coronado-Zamora and
  • Josefa González

  Genome Res. September 2023 33: 1541-1553; Published in Advance October 4, 2023, doi:10.1101/gr.277565.122
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  Comprehensive isoform-level analysis reveals the contribution of alternative isoforms to venom evolution and repertoire diversity

  • Xinhai Ye,
  • Chun He,
  • Yi Yang,
  • Yu H. Sun,
  • Shijiao Xiong,
  • Kevin C. Chan,
  • Yuxuan Si,
  • Shan Xiao,
  • Xianxin Zhao,
  • Haiwei Lin,
  • Yang Mei,
  • Yufeng Yao,
  • Gongyin Ye,
  • Fei Wu,
  • and Qi Fang

  Genome Res. September 2023 33: 1554-1567; Published in Advance October 5, 2023, doi:10.1101/gr.277707.123
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  Genetic inhibitors of APOBEC3B-induced mutagenesis

  • Tony M. Mertz,
  • Elizabeth Rice-Reynolds,
  • Ly Nguyen,
  • Anna Wood,
  • Cameron Cordero,
  • Nicholas Bray,
  • Victoria Harcy,
  • Rudri K. Vyas,
  • Debra Mitchell,
  • Kirill Lobachev,
  • and Steven A. Roberts

  Genome Res. September 2023 33: 1568-1581; Published in Advance August 2, 2023, doi:10.1101/gr.277430.122
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  Telomerase-independent survival leads to a mosaic of complex subtelomere rearrangements in Chlamydomonas reinhardtii

  • Frédéric Chaux,
  • Nicolas Agier,
  • Clotilde Garrido,
  • Gilles Fischer,
  • Stephan Eberhard,
  • and Zhou Xu

  Genome Res. September 2023 33: 1582-1598; Published in Advance August 14, 2023, doi:10.1101/gr.278043.123
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