Index by Author

December 2023; 33 (12)
  1. A
  2. B
  3. C
  4. D
  5. E
  6. F
  7. G
  8. H
  9. I
  10. J
  11. K
  12. L
  13. M
  14. N
  15. O
  16. P
  17. Q
  18. R
  19. S
  20. T
  21. U
  22. V
  23. W
  24. X
  25. Y
  26. Z

A

  1. Audano, Peter A.

    • Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall Genome Res. December 2023 33: 2029-2040; Published in Advance December 7, 2023, doi:10.1101/gr.278070.123
      OPEN ACCESS ARTICLE

B

  1. Beck, Christine R.

    • Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall Genome Res. December 2023 33: 2029-2040; Published in Advance December 7, 2023, doi:10.1101/gr.278070.123
      OPEN ACCESS ARTICLE

  2. Böhne, Astrid

C

  1. Chen, Boning

    • Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase Genome Res. December 2023 33: 2108-2118; Published in Advance December 11, 2023, doi:10.1101/gr.278273.123

  2. Chrysostomakis, Ioannis

  3. Chun, Sunwoo

    • De novo transcriptome assembly of mouse male germ cells reveals novel genes, stage-specific bidirectional promoter activity, and noncoding RNA expression Genome Res. December 2023 33: 2060-2078; Published in Advance December 21, 2023, doi:10.1101/gr.278060.123
      OPEN ACCESS ARTICLE

  4. Conrad, Donald F.

    • A naturally occurring variant of MBD4 causes maternal germline hypermutation in primates Genome Res. December 2023 33: 2053-2059; Published in Advance November 20, 2023, doi:10.1101/gr.277977.123
      OPEN ACCESS ARTICLE

D

  1. Dekker, Job

  2. Ding, Yi

    • A DNA methylation haplotype block landscape in human tissues and preimplantation embryos reveals regulatory elements defined by comethylation patterns Genome Res. December 2023 33: 2041-2052; Published in Advance November 8, 2023, doi:10.1101/gr.278146.123

  3. Du, Alan Y.

    • Using long-read CAGE sequencing to profile cryptic-promoter-derived transcripts and their contribution to the immunopeptidome Genome Res. December 2023 33: 2143-2155; Published in Advance December 8, 2023, doi:10.1101/gr.277061.122
      OPEN ACCESS ARTICLE

E

  1. Ebert, Peter

    • Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall Genome Res. December 2023 33: 2029-2040; Published in Advance December 7, 2023, doi:10.1101/gr.278070.123
      OPEN ACCESS ARTICLE

  2. Ebler, Jana

    • Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall Genome Res. December 2023 33: 2029-2040; Published in Advance December 7, 2023, doi:10.1101/gr.278070.123
      OPEN ACCESS ARTICLE

  3. Eichler, Evan E.

    • Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall Genome Res. December 2023 33: 2029-2040; Published in Advance December 7, 2023, doi:10.1101/gr.278070.123
      OPEN ACCESS ARTICLE

  4. Emani, Prashant S.

    • Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases Genome Res. December 2023 33: 2156-2173; Published in Advance December 14, 2023, doi:10.1101/gr.278322.123
      OPEN ACCESS ARTICLE

  5. Erkek-Ozhan, Serap

    • De novo transcriptome assembly of mouse male germ cells reveals novel genes, stage-specific bidirectional promoter activity, and noncoding RNA expression Genome Res. December 2023 33: 2060-2078; Published in Advance December 21, 2023, doi:10.1101/gr.278060.123
      OPEN ACCESS ARTICLE

F

  1. Fang, Hai

    • A DNA methylation haplotype block landscape in human tissues and preimplantation embryos reveals regulatory elements defined by comethylation patterns Genome Res. December 2023 33: 2041-2052; Published in Advance November 8, 2023, doi:10.1101/gr.278146.123

  2. Fazzio, Thomas G.

  3. Feng, Yan

    • A DNA methylation haplotype block landscape in human tissues and preimplantation embryos reveals regulatory elements defined by comethylation patterns Genome Res. December 2023 33: 2041-2052; Published in Advance November 8, 2023, doi:10.1101/gr.278146.123

G

  1. Gao, Siqi

    • A DNA methylation haplotype block landscape in human tissues and preimplantation embryos reveals regulatory elements defined by comethylation patterns Genome Res. December 2023 33: 2041-2052; Published in Advance November 8, 2023, doi:10.1101/gr.278146.123

  2. Garimella, Kiran

    • Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall Genome Res. December 2023 33: 2029-2040; Published in Advance December 7, 2023, doi:10.1101/gr.278070.123
      OPEN ACCESS ARTICLE

  3. Geradi, Maya N.

    • Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases Genome Res. December 2023 33: 2156-2173; Published in Advance December 14, 2023, doi:10.1101/gr.278322.123
      OPEN ACCESS ARTICLE

  4. Gerstein, Mark B.

    • Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases Genome Res. December 2023 33: 2156-2173; Published in Advance December 14, 2023, doi:10.1101/gr.278322.123
      OPEN ACCESS ARTICLE

  5. Gibcus, Johan

  6. Gill, Mark E.

    • De novo transcriptome assembly of mouse male germ cells reveals novel genes, stage-specific bidirectional promoter activity, and noncoding RNA expression Genome Res. December 2023 33: 2060-2078; Published in Advance December 21, 2023, doi:10.1101/gr.278060.123
      OPEN ACCESS ARTICLE

  7. Gopalan, Sneha

  8. Grasty, Monica R.

    • Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases Genome Res. December 2023 33: 2156-2173; Published in Advance December 14, 2023, doi:10.1101/gr.278322.123
      OPEN ACCESS ARTICLE

  9. Gürsoy, Gamze

    • Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases Genome Res. December 2023 33: 2156-2173; Published in Advance December 14, 2023, doi:10.1101/gr.278322.123
      OPEN ACCESS ARTICLE

H

  1. Hartemink, Alexander J.

    • Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase Genome Res. December 2023 33: 2108-2118; Published in Advance December 11, 2023, doi:10.1101/gr.278273.123

  2. Harvey, William T.

    • Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall Genome Res. December 2023 33: 2029-2040; Published in Advance December 7, 2023, doi:10.1101/gr.278070.123
      OPEN ACCESS ARTICLE

  3. He, Feng

    • tRNA-derived small RNAs are embedded in the gene regulatory network instructing Drosophila metamorphosis Genome Res. December 2023 33: 2119-2132; Published in Advance November 16, 2023, doi:10.1101/gr.278128.123

  4. Hoekzema, Kendra

    • Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall Genome Res. December 2023 33: 2029-2040; Published in Advance December 7, 2023, doi:10.1101/gr.278070.123
      OPEN ACCESS ARTICLE

  5. Hong, Yuyang

    • A DNA methylation haplotype block landscape in human tissues and preimplantation embryos reveals regulatory elements defined by comethylation patterns Genome Res. December 2023 33: 2041-2052; Published in Advance November 8, 2023, doi:10.1101/gr.278146.123

J

  1. Jang, H. Josh

    • Using long-read CAGE sequencing to profile cryptic-promoter-derived transcripts and their contribution to the immunopeptidome Genome Res. December 2023 33: 2143-2155; Published in Advance December 8, 2023, doi:10.1101/gr.277061.122
      OPEN ACCESS ARTICLE

  2. Jessberger, Gregor

K

  1. Kukowka, Sandra

L

  1. Li, Xin Zhiguo

  2. Liang, Ching-Yeu

    • De novo transcriptome assembly of mouse male germ cells reveals novel genes, stage-specific bidirectional promoter activity, and noncoding RNA expression Genome Res. December 2023 33: 2060-2078; Published in Advance December 21, 2023, doi:10.1101/gr.278060.123
      OPEN ACCESS ARTICLE

  3. Lima, Ana C.

    • A naturally occurring variant of MBD4 causes maternal germline hypermutation in primates Genome Res. December 2023 33: 2053-2059; Published in Advance November 20, 2023, doi:10.1101/gr.277977.123
      OPEN ACCESS ARTICLE

  4. Liu, Leiqin

    • A DNA methylation haplotype block landscape in human tissues and preimplantation embryos reveals regulatory elements defined by comethylation patterns Genome Res. December 2023 33: 2041-2052; Published in Advance November 8, 2023, doi:10.1101/gr.278146.123

M

  1. Ma, Jun

    • tRNA-derived small RNAs are embedded in the gene regulatory network instructing Drosophila metamorphosis Genome Res. December 2023 33: 2119-2132; Published in Advance November 16, 2023, doi:10.1101/gr.278128.123

  2. MacAlpine, David M.

    • Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase Genome Res. December 2023 33: 2108-2118; Published in Advance December 11, 2023, doi:10.1101/gr.278273.123

  3. MacAlpine, Heather K.

    • Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase Genome Res. December 2023 33: 2108-2118; Published in Advance December 11, 2023, doi:10.1101/gr.278273.123

  4. Maeng, Ju Heon

    • Using long-read CAGE sequencing to profile cryptic-promoter-derived transcripts and their contribution to the immunopeptidome Genome Res. December 2023 33: 2143-2155; Published in Advance December 8, 2023, doi:10.1101/gr.277061.122
      OPEN ACCESS ARTICLE

  5. Marschall, Tobias

    • Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall Genome Res. December 2023 33: 2029-2040; Published in Advance December 7, 2023, doi:10.1101/gr.278070.123
      OPEN ACCESS ARTICLE

  6. Martin, Sebastian

  7. Meuthen, Denis

  8. Miranker, Andrew

    • Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases Genome Res. December 2023 33: 2156-2173; Published in Advance December 14, 2023, doi:10.1101/gr.278322.123
      OPEN ACCESS ARTICLE

  9. Munson, Katherine M.

    • Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall Genome Res. December 2023 33: 2029-2040; Published in Advance December 7, 2023, doi:10.1101/gr.278070.123
      OPEN ACCESS ARTICLE

O

  1. Oğuzhan, Zeynep

  2. Ozonov, Evgeniy A.

    • De novo transcriptome assembly of mouse male germ cells reveals novel genes, stage-specific bidirectional promoter activity, and noncoding RNA expression Genome Res. December 2023 33: 2060-2078; Published in Advance December 21, 2023, doi:10.1101/gr.278060.123
      OPEN ACCESS ARTICLE

P

  1. Peters, Antoine H.F.M.

    • De novo transcriptome assembly of mouse male germ cells reveals novel genes, stage-specific bidirectional promoter activity, and noncoding RNA expression Genome Res. December 2023 33: 2060-2078; Published in Advance December 21, 2023, doi:10.1101/gr.278060.123
      OPEN ACCESS ARTICLE

  2. Peters, Jan-Michael

  3. Peterson, Samuel

    • A naturally occurring variant of MBD4 causes maternal germline hypermutation in primates Genome Res. December 2023 33: 2053-2059; Published in Advance November 20, 2023, doi:10.1101/gr.277977.123
      OPEN ACCESS ARTICLE

  4. Porubsky, David

    • Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall Genome Res. December 2023 33: 2029-2040; Published in Advance December 7, 2023, doi:10.1101/gr.278070.123
      OPEN ACCESS ARTICLE

R

  1. Rahbari, Raheleh

    • A naturally occurring variant of MBD4 causes maternal germline hypermutation in primates Genome Res. December 2023 33: 2053-2059; Published in Advance November 20, 2023, doi:10.1101/gr.277977.123
      OPEN ACCESS ARTICLE

  2. Rando, Oliver J.

  3. Ray, Karina

    • A naturally occurring variant of MBD4 causes maternal germline hypermutation in primates Genome Res. December 2023 33: 2053-2059; Published in Advance November 20, 2023, doi:10.1101/gr.277977.123
      OPEN ACCESS ARTICLE

  4. Rohmer, Alexia

    • De novo transcriptome assembly of mouse male germ cells reveals novel genes, stage-specific bidirectional promoter activity, and noncoding RNA expression Genome Res. December 2023 33: 2060-2078; Published in Advance December 21, 2023, doi:10.1101/gr.278060.123
      OPEN ACCESS ARTICLE

S

  1. Sanghvi, Rashesh

    • A naturally occurring variant of MBD4 causes maternal germline hypermutation in primates Genome Res. December 2023 33: 2053-2059; Published in Advance November 20, 2023, doi:10.1101/gr.277977.123
      OPEN ACCESS ARTICLE

  2. Shi, Jiantao

    • A DNA methylation haplotype block landscape in human tissues and preimplantation embryos reveals regulatory elements defined by comethylation patterns Genome Res. December 2023 33: 2041-2052; Published in Advance November 8, 2023, doi:10.1101/gr.278146.123

  3. Shi, Junling

    • tRNA-derived small RNAs are embedded in the gene regulatory network instructing Drosophila metamorphosis Genome Res. December 2023 33: 2119-2132; Published in Advance November 16, 2023, doi:10.1101/gr.278128.123

  4. Stary, Georg

  5. Stendahl, Alexandra M.

    • A naturally occurring variant of MBD4 causes maternal germline hypermutation in primates Genome Res. December 2023 33: 2053-2059; Published in Advance November 20, 2023, doi:10.1101/gr.277977.123
      OPEN ACCESS ARTICLE

  6. Stocsits, Roman R.

  7. Strelkova, Olga S.

  8. Sun, Yu

T

  1. Tang, Wen

  2. Thünken, Timo

  3. Tzeng, Shin-Cheng

    • Using long-read CAGE sequencing to profile cryptic-promoter-derived transcripts and their contribution to the immunopeptidome Genome Res. December 2023 33: 2143-2155; Published in Advance December 8, 2023, doi:10.1101/gr.277061.122
      OPEN ACCESS ARTICLE

V

  1. Várnai, Csilla

  2. Vitt, Simon

W

  1. Wang, Ting

    • Using long-read CAGE sequencing to profile cryptic-promoter-derived transcripts and their contribution to the immunopeptidome Genome Res. December 2023 33: 2143-2155; Published in Advance December 8, 2023, doi:10.1101/gr.277061.122
      OPEN ACCESS ARTICLE

  2. Wu, Jingyi

X

  1. Xu, Jiaqi

    • tRNA-derived small RNAs are embedded in the gene regulatory network instructing Drosophila metamorphosis Genome Res. December 2023 33: 2119-2132; Published in Advance November 16, 2023, doi:10.1101/gr.278128.123

Y

  1. Yang, Chih-Hsiang

  2. Yang, Liyan

  3. Yin, Qiangzong

Z

  1. Zhang, Zhiqiang

    • A DNA methylation haplotype block landscape in human tissues and preimplantation embryos reveals regulatory elements defined by comethylation patterns Genome Res. December 2023 33: 2041-2052; Published in Advance November 8, 2023, doi:10.1101/gr.278146.123

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