Table of Contents

Methods

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Correcting signal biases and detecting regulatory elements in STARR-seq data
- Young-Sook Kim,
- Graham D. Johnson,
- Jungkyun Seo,
- Alejandro Barrera,
- Thomas N. Cowart,
- William H. Majoros,
- Alejandro Ochoa,
- Andrew S. Allen,
- and Timothy E. Reddy
Genome Res. May 2021 31: 877-889; Published in Advance March 15, 2021, doi:10.1101/gr.269209.120
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Systematic evaluation of the effect of polyadenylation signal variants on the expression of disease-associated genes
- Meng Chen,
- Ran Wei,
- Gang Wei,
- Mingqing Xu,
- Zhixi Su,
- Chen Zhao,
- and Ting Ni
Genome Res. May 2021 31: 890-899; Published in Advance April 19, 2021, doi:10.1101/gr.270256.120
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A HIT-trapping strategy for rapid generation of reversible and conditional alleles using a universal donor
- Hengxing Lu,
- Jun Liu,
- Tao Feng,
- Zihang Guo,
- Yunjun Yin,
- Fei Gao,
- Gengsheng Cao,
- Xuguang Du,
- and Sen Wu
Genome Res. May 2021 31: 900-909; Published in Advance April 1, 2021, doi:10.1101/gr.271312.120
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Optimized sample selection for cost-efficient long-read population sequencing
- T. Rhyker Ranallo-Benavidez,
- Zachary Lemmon,
- Sebastian Soyk,
- Sergey Aganezov,
- William J. Salerno,
- Rajiv C. McCoy,
- Zachary B. Lippman,
- Michael C. Schatz,
- and Fritz J. Sedlazeck
Genome Res. May 2021 31: 910-918; Published in Advance April 2, 2021, doi:10.1101/gr.264879.120
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A plug and play microfluidic platform for standardized sensitive low-input chromatin immunoprecipitation
- René A.M. Dirks,
- Peter C. Thomas,
- Haoyu Wu,
- Robert C. Jones,
- Hendrik G. Stunnenberg,
- and Hendrik Marks
Genome Res. May 2021 31: 919-933; Published in Advance March 11, 2021, doi:10.1101/gr.260745.120

Erratum

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Erratum: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information
- Zhoutao Chen,
- Long Pham,
- Tsai-Chin Wu,
- Guoya Mo,
- Yu Xia,
- Peter L. Chang,
- Devin Porter,
- Tan Phan,
- Huu Che,
- Hao Tran,
- Vikas Bansal,
- Justin Shaffer,
- Pedro Belda-Ferre,
- Greg Humphrey,
- Rob Knight,
- Pavel Pevzner,
- Son Pham,
- Yong Wang,
- and Ming Lei
Genome Res. May 2021 31: 934; doi:10.1101/gr.275614.121
OPEN ACCESS ARTICLE

Research

DNA methylation epitypes highlight underlying developmental and disease pathways in acute myeloid leukemia

Copy number variation underlies complex phenotypes in domestic dog breeds and other canids

Local nucleosome dynamics and eviction following a double-strand break are reversible by NHEJ-mediated repair in the absence of DNA replication

The Enterprise, a massive transposon carrying Spok meiotic drive genes

The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible

Genome-wide analysis of plant miRNA action clarifies levels of regulatory dynamics across developmental contexts

Reevaluation of the Toxoplasma gondii and Neospora caninum genomes reveals misassembly, karyotype differences, and chromosomal rearrangements

Third-generation sequencing revises the molecular karyotype for Toxoplasma gondii and identifies emerging copy number variants in sexual recombinants

A novel fragmented mitochondrial genome in the protist pathogen Toxoplasma gondii and related tissue coccidia

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

Methods

Correcting signal biases and detecting regulatory elements in STARR-seq data

Systematic evaluation of the effect of polyadenylation signal variants on the expression of disease-associated genes

A HIT-trapping strategy for rapid generation of reversible and conditional alleles using a universal donor

Optimized sample selection for cost-efficient long-read population sequencing

A plug and play microfluidic platform for standardized sensitive low-input chromatin immunoprecipitation

Erratum

Erratum: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information

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