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  Purifying selection on noncoding deletions of human regulatory loci detected using their cellular pleiotropy

  • David W. Radke,
  • Jae Hoon Sul,
  • Daniel J. Balick,
  • Sebastian Akle,
  • Alzheimer's Disease Neuroimaging Initiative,
  • Robert C. Green,
  • and Shamil R. Sunyaev

  Genome Res. June 2021 31: 935-946; Published in Advance May 7, 2021, doi:10.1101/gr.275263.121
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  Tissue-specific reprogramming of host tRNA transcriptome by the microbiome

  • Jia Huang,
  • Wenjun Chen,
  • Fan Zhou,
  • Zhichang Pang,
  • Luoluo Wang,
  • Tao Pan,
  • and Xiaoyun Wang

  Genome Res. June 2021 31: 947-957; Published in Advance April 15, 2021, doi:10.1101/gr.272153.120
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  Identification and characterization of centromeric sequences in Xenopus laevis

  • Owen K. Smith,
  • Charles Limouse,
  • Kelsey A. Fryer,
  • Nicole A. Teran,
  • Kousik Sundararajan,
  • Rebecca Heald,
  • and Aaron F. Straight

  Genome Res. June 2021 31: 958-967; Published in Advance April 19, 2021, doi:10.1101/gr.267781.120
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  CTCF looping is established during gastrulation in medaka embryos

  • Ryohei Nakamura,
  • Yuichi Motai,
  • Masahiko Kumagai,
  • Candice L. Wike,
  • Haruyo Nishiyama,
  • Yoichiro Nakatani,
  • Neva C. Durand,
  • Kaori Kondo,
  • Takashi Kondo,
  • Tatsuya Tsukahara,
  • Atsuko Shimada,
  • Bradley R. Cairns,
  • Erez Lieberman Aiden,
  • Shinichi Morishita,
  • and Hiroyuki Takeda

  Genome Res. June 2021 31: 968-980; Published in Advance May 18, 2021, doi:10.1101/gr.269951.120
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  Chromatin architecture transitions from zebrafish sperm through early embryogenesis

  • Candice L. Wike,
  • Yixuan Guo,
  • Mengyao Tan,
  • Ryohei Nakamura,
  • Dana Klatt Shaw,
  • Noelia Díaz,
  • Aneasha F. Whittaker-Tademy,
  • Neva C. Durand,
  • Erez Lieberman Aiden,
  • Juan M. Vaquerizas,
  • David Grunwald,
  • Hiroyuki Takeda,
  • and Bradley R. Cairns

  Genome Res. June 2021 31: 981-994; Published in Advance May 18, 2021, doi:10.1101/gr.269860.120
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  Antisense RNAs during early vertebrate development are divided in groups with distinct features

  • Sanjana Pillay,
  • Hazuki Takahashi,
  • Piero Carninci,
  • and Aditi Kanhere

  Genome Res. June 2021 31: 995-1010; Published in Advance April 1, 2021, doi:10.1101/gr.262964.120
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  Trajectory mapping of the early Drosophila germline reveals controls of zygotic activation and sex differentiation

  • Yi-Ru Li,
  • Hsiao Wen Lai,
  • Hsiao Han Huang,
  • Hsing-Chun Chen,
  • Sebastian D. Fugmann,
  • and Shu Yuan Yang

  Genome Res. June 2021 31: 1011-1023; Published in Advance April 15, 2021, doi:10.1101/gr.271148.120
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  The mode of expression divergence in Drosophila fat body is infection-specific

  • Bryan A. Ramirez-Corona,
  • Stephanie Fruth,
  • Oluchi Ofoegbu,
  • and Zeba Wunderlich

  Genome Res. June 2021 31: 1024-1034; Published in Advance April 15, 2021, doi:10.1101/gr.269597.120
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  Linking the dynamics of chromatin occupancy and transcription with predictive models

  • Trung Q. Tran,
  • Heather K. MacAlpine,
  • Vinay Tripuraneni,
  • Sneha Mitra,
  • David M. MacAlpine,
  • and Alexander J. Hartemink

  Genome Res. June 2021 31: 1035-1046; Published in Advance April 23, 2021, doi:10.1101/gr.267237.120
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  Distinct roles for RSC and SWI/SNF chromatin remodelers in genomic excision repair

  • Kaitlynne A. Bohm,
  • Amelia J. Hodges,
  • Wioletta Czaja,
  • Kathiresan Selvam,
  • Michael J. Smerdon,
  • Peng Mao,
  • and John J. Wyrick

  Genome Res. June 2021 31: 1047-1059; Published in Advance May 17, 2021, doi:10.1101/gr.274373.120
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  Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants

  • Kazumasa Shirai,
  • Mitsuhiko P. Sato,
  • Ranko Nishi,
  • Masahide Seki,
  • Yutaka Suzuki,
  • and Kousuke Hanada

  Genome Res. June 2021 31: 1060-1068; Published in Advance May 18, 2021, doi:10.1101/gr.271726.120
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