Volume 30, Issue 9 | September 2020

Research
- - Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma
    Raquel Ordoñez
    Marta Kulis
    Nuria Russiñol
    Vicente Chapaprieta
    Arantxa Carrasco-Leon
    Beatriz García-Torre Stella Charalampopoulou Guillem Clot Renée Beekman Cem Meydan Martí Duran-Ferrer Núria Verdaguer-Dot Roser Vilarrasa-Blasi Paula Soler-Vila Leire Garate Estíbaliz Miranda Edurne San José-Enériz Juan R. Rodriguez-Madoz Teresa Ezponda Rebeca Martínez-Turrilas Amaia Vilas-Zornoza David Lara-Astiaso Daphné Dupéré-Richer Joost H.A. Martens Halima El-Omri Ruba Y. Taha Maria J. Calasanz Bruno Paiva Jesus San Miguel Paul Flicek Ivo Gut Ari Melnick Constantine S. Mitsiades Jonathan D. Licht Elias Campo
    ...[+30 authors]...,
    Hendrik G. Stunnenberg
    Xabier Agirre
    Felipe Prosper
    Jose I. Martin-Subero
    First Published August 20, 2020
  - Somatic structural variation targets neurodevelopmental genes and identifies SHANK2 as a tumor suppressor in neuroblastoma
    Gonzalo Lopez
    Karina L. Conkrite
    Miriam Doepner
    Komal S. Rathi
    Apexa Modi
    Zalman Vaksman Lance M. Farra Eric Hyson Moataz Noureddine Jun S. Wei Malcolm A. Smith Shahab Asgharzadeh Robert C. Seeger Javed Khan
    ...[+9 authors]...,
    Jaime Guidry Auvil
    Daniela S. Gerhard
    John M. Maris
    Sharon J. Diskin
    First Published August 13, 2020
  - Long-read sequencing for non-small-cell lung cancer genomes
    Yoshitaka Sakamoto
    Liu Xu
    Masahide Seki
    Toshiyuki T. Yokoyama
    Masahiro Kasahara
    Yukie Kashima Akihiro Ohashi Yoko Shimada Noriko Motoi Katsuya Tsuchihara Susumu S. Kobayashi
    ...[+6 authors]...,
    Takashi Kohno
    Yuichi Shiraishi
    Ayako Suzuki
    Yutaka Suzuki
    First Published September 4, 2020
  - Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
    Sergey Aganezov
    Sara Goodwin
    Rachel M. Sherman
    Fritz J. Sedlazeck
    Gayatri Arun
    Sonam Bhatia Isac Lee Melanie Kirsche Robert Wappel Melissa Kramer Karen Kostroff
    ...[+6 authors]...,
    David L. Spector
    Winston Timp
    W. Richard McCombie
    Michael C. Schatz
    First Published September 4, 2020
Methods
- - Reconstruction of clone- and haplotype-specific cancer genome karyotypes from bulk tumor samples
    Sergey Aganezov
    Benjamin J. Raphael
    First Published September 4, 2020
  - HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
    Sergey Nurk
    Brian P. Walenz
    Arang Rhie
    Mitchell R. Vollger
    Glennis A. Logsdon
    Robert Grothe
    ...[+1 authors]...,
    Karen H. Miga
    Evan E. Eichler
    Adam M. Phillippy
    Sergey Koren
    First Published August 14, 2020
  - Background-suppressed live visualization of genomic loci with an improved CRISPR system based on a split fluorophore
    Narendra Chaudhary
    Si-Hyeong Nho
    Hayoon Cho
    Narangerel Gantumur
    Jae Sun Ra
    First Published September 4, 2020
  - High-throughput single-cell functional elucidation of neurodevelopmental disease–associated genes reveals convergent mechanisms altering neuronal differentiation
    Matthew A. Lalli
    Denis Avey
    Joseph D. Dougherty
    Jeffrey Milbrandt
    Robi D. Mitra
    First Published September 4, 2020
  - Native molecule sequencing by nano-ID reveals synthesis and stability of RNA isoforms
    Kerstin C. Maier
    Saskia Gressel
    Patrick Cramer
    Björn Schwalb
    First Published September 4, 2020
  - Molecular barcoding of native RNAs using nanopore sequencing and deep learning
    Martin A. Smith
    Tansel Ersavas
    James M. Ferguson
    Huanle Liu
    Morghan C. Lucas
    First Published September 9, 2020
  - High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing
    Nicholas D. Sanderson
    Jeremy Swann
    Leanne Barker
    James Kavanagh
    Sarah Hoosdally
    First Published September 1, 2020
  - The Nubeam reference-free approach to analyze metagenomic sequencing reads
    Hang Dai
    Yongtao Guan
    First Published September 3, 2020
Corrigenda
- - Corrigendum: 3′ UTR lengthening as a novel mechanism in regulating cellular senescence
    Meng Chen
    Guoliang Lyu
    Miao Han
    Hongbo Nie
    Ting Shen
    Wei Chen Yichi Niu Yifan Song Xueping Li Huan Li Xinyu Chen Ziyue Wang Zheng Xia Wei Li Xiao-Li Tian Chen Ding Jun Gu Yufang Zheng Xinhua Liu
    ...[+14 authors]...,
    Jinfeng Hu
    Gang Wei
    Wei Tao
    Ting Ni
    First Published September 14, 2020
  - Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping
    Jordan A. Ramilowski
    Chi Wai Yip
    Saumya Agrawal
    Jen-Chien Chang
    Yari Ciani
    Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
    ...[+107 authors]...,
    Ken Yagi
    Michiel J.L. de Hoon
    Jay W. Shin
    Piero Carninci
    First Published September 14, 2020

Table of Contents

Volume 30, Issue 9 | September 2020

Research

Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma

Somatic structural variation targets neurodevelopmental genes and identifies SHANK2 as a tumor suppressor in neuroblastoma

Long-read sequencing for non-small-cell lung cancer genomes

Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing

Methods

Reconstruction of clone- and haplotype-specific cancer genome karyotypes from bulk tumor samples

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

Background-suppressed live visualization of genomic loci with an improved CRISPR system based on a split fluorophore

High-throughput single-cell functional elucidation of neurodevelopmental disease–associated genes reveals convergent mechanisms altering neuronal differentiation

Native molecule sequencing by nano-ID reveals synthesis and stability of RNA isoforms

Molecular barcoding of native RNAs using nanopore sequencing and deep learning

High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing

The Nubeam reference-free approach to analyze metagenomic sequencing reads

Corrigenda

Corrigendum: 3′ UTR lengthening as a novel mechanism in regulating cellular senescence

Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping

Table of Contents

Volume 30, Issue 9 | September 2020

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Research

Methods

Corrigenda