Table of Contents

April 2020; 30 (4)

Research

  • Redundant and specific roles of cohesin STAG subunits in chromatin looping and transcriptional control

    • Valentina Casa,
    • Macarena Moronta Gines,
    • Eduardo Gade Gusmao,
    • Johan A. Slotman,
    • Anne Zirkel,
    • Natasa Josipovic,
    • Edwin Oole,
    • Wilfred F.J. van IJcken,
    • Adriaan B. Houtsmuller,
    • Argyris Papantonis,
    • and Kerstin S. Wendt
    Genome Res. April 2020 30: 515-527; Published in Advance April 6, 2020, doi:10.1101/gr.253211.119
    OPEN ACCESS ARTICLE

  • Leveraging mouse chromatin data for heritability enrichment informs common disease architecture and reveals cortical layer contributions to schizophrenia

    • Paul W. Hook and
    • Andrew S. McCallion
    Genome Res. April 2020 30: 528-539; Published in Advance April 17, 2020, doi:10.1101/gr.256578.119

  • Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

    • Adebola Enikanolaiye,
    • Julie Ruston,
    • Rong Zeng,
    • Christine Taylor,
    • Marijke Schrock,
    • Christie M. Buchovecky,
    • Jay Shendure,
    • Elif Acar,
    • and Monica J. Justice
    Genome Res. April 2020 30: 540-552; Published in Advance April 21, 2020, doi:10.1101/gr.258400.119
    OPEN ACCESS ARTICLE

  • Noncoding regions underpin avian bill shape diversification at macroevolutionary scales

    • Leeban Yusuf,
    • Matthew C. Heatley,
    • Joseph P.G. Palmer,
    • Henry J. Barton,
    • Christopher R. Cooney,
    • and Toni I. Gossmann
    Genome Res. April 2020 30: 553-565; Published in Advance April 8, 2020, doi:10.1101/gr.255752.119

  • Rapid evolution of piRNA-mediated silencing of an invading transposable element was driven by abundant de novo mutations

    • Shuo Zhang,
    • Beverly Pointer,
    • and Erin S. Kelleher
    Genome Res. April 2020 30: 566-575; Published in Advance April 1, 2020, doi:10.1101/gr.251546.119

  • Arabidopsis retrotransposon virus-like particles and their regulation by epigenetically activated small RNA

    • Seung Cho Lee,
    • Evan Ernst,
    • Benjamin Berube,
    • Filipe Borges,
    • Jean-Sebastien Parent,
    • Paul Ledon,
    • Andrea Schorn,
    • and Robert A. Martienssen
    Genome Res. April 2020 30: 576-588; Published in Advance April 17, 2020, doi:10.1101/gr.259044.119

Methods

  • Complete characterization of the human immune cell transcriptome using accurate full-length cDNA sequencing

    • Charles Cole,
    • Ashley Byrne,
    • Matthew Adams,
    • Roger Volden,
    • and Christopher Vollmers
    Genome Res. April 2020 30: 589-601; Published in Advance April 20, 2020, doi:10.1101/gr.257188.119

  • RETrace: simultaneous retrospective lineage tracing and methylation profiling of single cells

    • Christopher Jen-Yue Wei and
    • Kun Zhang
    Genome Res. April 2020 30: 602-610; Published in Advance March 3, 2020, doi:10.1101/gr.255851.119
    OPEN ACCESS ARTICLE

  • Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

    • Chiaowen Joyce Hsiao,
    • PoYuan Tung,
    • John D. Blischak,
    • Jonathan E. Burnett,
    • Kenneth A. Barr,
    • Kushal K. Dey,
    • Matthew Stephens,
    • and Yoav Gilad
    Genome Res. April 2020 30: 611-621; Published in Advance April 20, 2020, doi:10.1101/gr.247759.118
    OPEN ACCESS ARTICLE

  • Time course regulatory analysis based on paired expression and chromatin accessibility data

    • Zhana Duren,
    • Xi Chen,
    • Jingxue Xin,
    • Yong Wang,
    • and Wing Hung Wong
    Genome Res. April 2020 30: 622-634; Published in Advance March 18, 2020, doi:10.1101/gr.257063.119
    OPEN ACCESS ARTICLE

  • Inhibition of transcription leads to rewiring of locus-specific chromatin proteomes

    • Deepani W. Poramba-Liyanage,
    • Tessy Korthout,
    • Christine E. Cucinotta,
    • Ila van Kruijsbergen,
    • Tibor van Welsem,
    • Dris El Atmioui,
    • Huib Ovaa,
    • Toshio Tsukiyama,
    • and Fred van Leeuwen
    Genome Res. April 2020 30: 635-646; Published in Advance March 18, 2020, doi:10.1101/gr.256255.119
    OPEN ACCESS ARTICLE

  • Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics

    • Alexey Vorobev,
    • Marion Dupouy,
    • Quentin Carradec,
    • Tom O. Delmont,
    • Anita Annamalé,
    • Patrick Wincker,
    • and Eric Pelletier
    Genome Res. April 2020 30: 647-659; Published in Advance March 23, 2020, doi:10.1101/gr.253070.119
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This Issue

April 2020; 30 (4)
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