Volume 30, Issue 11 | November 2020

Research
- - V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s
    Yana Safonova
    Pavel A. Pevzner
    First Published September 18, 2020
  - Transposon expression in the Drosophila brain is driven by neighboring genes and diversifies the neural transcriptome
    Christoph D. Treiber
    Scott Waddell
    First Published September 24, 2020
  - Active retrotransposons help maintain pericentromeric heterochromatin required for faithful cell division
    Yajing Hao
    Dongpeng Wang
    Shuheng Wu
    Xiao Li
    Changwei Shao
    Peng Zhang Jia-Yu Chen
    ...[+2 authors]...,
    Do-Hwan Lim
    Xiang-Dong Fu
    Runsheng Chen
    Shunmin He
    First Published October 15, 2020
  - Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response
    Ariadna Picart-Picolo
    Stefan Grob
    Nathalie Picault
    Michal Franek
    Christel Llauro
    Thierry Halter Tom R. Maier Edouard Jobet Julie Descombin Panpan Zhang Vijayapalani Paramasivan Thomas J. Baum
    ...[+7 authors]...,
    Lionel Navarro
    Martina Dvořáčková
    Marie Mirouze
    Frédéric Pontvianne
    First Published October 8, 2020
  - A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize
    Mélisande Blein-Nicolas
    Sandra Sylvia Negro
    Thierry Balliau
    Claude Welcker
    Llorenç Cabrera-Bosquet
    First Published October 15, 2020
  - An optogenetic switch for the Set2 methyltransferase provides evidence for transcription-dependent and -independent dynamics of H3K36 methylation
    Andrew M. Lerner
    Austin J. Hepperla
    Gregory R. Keele
    Hashem A. Meriesh
    Hayretin Yumerefendi
    David Restrepo Seth Zimmerman
    ...[+2 authors]...,
    James E. Bear
    Brian Kuhlman
    Ian J. Davis
    Brian D. Strahl
    First Published October 5, 2020
Methods
- - Whole-genome analysis of noncoding genetic variations identifies multiscale regulatory element perturbations associated with Hirschsprung disease
    Alexander Xi Fu
    Kathy Nga-Chu Lui
    Clara Sze-Man Tang
    Ray Kit Ng
    Frank Pui-Ling Lai
    Sin-Ting Lau Zhixin Li Maria-Mercè Garcia-Barcelo
    ...[+3 authors]...,
    Pak-Chung Sham
    Paul Kwong-Hang Tam
    Elly Sau-Wai Ngan
    Kevin Y. Yip
    First Published September 18, 2020
  - Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain
    Sara Castagnola
    Julie Cazareth
    Kevin Lebrigand
    Marielle Jarjat
    Virginie Magnone
    First Published September 24, 2020
  - Identification of bona fide B2 SINE retrotransposon transcription through single-nucleus RNA-seq of the mouse hippocampus
    Sara B. Linker
    Lynne Randolph-Moore
    Kalyani Kottilil
    Fan Qiu
    Baptiste N. Jaeger
    First Published October 29, 2020
  - PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments
    Peng Liu
    Alexandra A. Soukup
    Emery H. Bresnick
    Colin N. Dewey
    Sündüz Keleş
    First Published September 21, 2020
  - Accurate reconstruction of bacterial pan- and core genomes with PEPPAN
    Zhemin Zhou
    Jane Charlesworth
    Mark Achtman
    First Published October 14, 2020
Resource
- - Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution
    Flavia Angela Maria Maggiolini
    Ashley D. Sanders
    Colin James Shew
    Arvis Sulovari
    Yafei Mao
    Marta Puig Claudia Rita Catacchio Maria Dellino Donato Palmisano Ludovica Mercuri Miriana Bitonto David Porubský Mario Cáceres Evan E. Eichler
    ...[+9 authors]...,
    Mario Ventura
    Megan Y. Dennis
    Jan O. Korbel
    Francesca Antonacci
    First Published October 22, 2020

Table of Contents

Volume 30, Issue 11 | November 2020

Research

V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s

Transposon expression in the Drosophila brain is driven by neighboring genes and diversifies the neural transcriptome

Active retrotransposons help maintain pericentromeric heterochromatin required for faithful cell division

Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response

A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize

An optogenetic switch for the Set2 methyltransferase provides evidence for transcription-dependent and -independent dynamics of H3K36 methylation

Methods

Whole-genome analysis of noncoding genetic variations identifies multiscale regulatory element perturbations associated with Hirschsprung disease

Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain

Identification of bona fide B2 SINE retrotransposon transcription through single-nucleus RNA-seq of the mouse hippocampus

PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments

Accurate reconstruction of bacterial pan- and core genomes with PEPPAN

Resource

Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution

Table of Contents

Volume 30, Issue 11 | November 2020

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Research

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