Volume 29, Issue 12 | December 2019

Research
- - Synchronized replication of genes encoding the same protein complex in fast-proliferating cells
    Ying Chen
    Ke Li
    Xiao Chu
    Lucas B. Carey
    Wenfeng Qian
    First Published October 29, 2019
  - Promoter-specific dynamics of TATA-binding protein association with the human genome
    Yuko Hasegawa
    Kevin Struhl
    First Published November 15, 2019
  - Clonal copy-number mosaicism in autoreactive T lymphocytes in diabetic NOD mice
    Maha Alriyami
    Luc Marchand
    Quan Li
    Xiaoyu Du
    Martin Olivier
    First Published November 6, 2019
  - A high-resolution gene expression atlas links dedicated meristem genes to key architectural traits
    Steffen Knauer
    Marie Javelle
    Lin Li
    Xianran Li
    Xiaoli Ma
    Kokulapalan Wimalanathan Sunita Kumari Robyn Johnston Samuel Leiboff Robert Meeley Patrick S. Schnable Doreen Ware Carolyn Lawrence-Dill
    ...[+8 authors]...,
    Jianming Yu
    Gary J. Muehlbauer
    Michael J. Scanlon
    Marja C.P. Timmermans
    First Published November 19, 2019
  - Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast
    Wu Wei
    Bianca P. Hennig
    Jingwen Wang
    Yujie Zhang
    Ilaria Piazza
    Yerma Pareja Sanchez
    ...[+1 authors]...,
    Christophe D. Chabbert
    Sophie H. Adjalley
    Lars M. Steinmetz
    Vicent Pelechano
    First Published November 18, 2019
  - Accessibility of promoter DNA is not the primary determinant of chromatin-mediated gene regulation
    Răzvan V. Chereji
    Peter R. Eriksson
    Josefina Ocampo
    Hemant K. Prajapati
    David J. Clark
    First Published September 11, 2019
Methods
- - Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome
    Elisa Oberbeckmann
    Michael Wolff
    Nils Krietenstein
    Mark Heron
    Jessica L. Ellins
    Andrea Schmid
    ...[+1 authors]...,
    Stefan Krebs
    Helmut Blum
    Ulrich Gerland
    Philipp Korber
    First Published November 6, 2019
  - Modeling Niemann–Pick disease type C in a human haploid cell line allows for patient variant characterization and clinical interpretation
    Steven Erwood
    Reid A. Brewer
    Teija M.I. Bily
    Eleonora Maino
    Liangchi Zhou
    First Published November 21, 2019
  - Network-based hierarchical population structure analysis for large genomic data sets
    Gili Greenbaum
    Amir Rubin
    Alan R. Templeton
    Noah A. Rosenberg
    First Published November 6, 2019
  - Identifying gene function and module connections by the integration of multispecies expression compendia
    Hao Li
    Daria Rukina
    Fabrice P.A. David
    Terytty Yang Li
    Chang-Myung Oh
    Arwen W. Gao Elena Katsyuba Maroun Bou Sleiman Andrea Komljenovic Qingyao Huang Robert W. Williams
    ...[+6 authors]...,
    Marc Robinson-Rechavi
    Kristina Schoonjans
    Stephan Morgenthaler
    Johan Auwerx
    First Published November 21, 2019
  - Deep profiling and custom databases improve detection of proteoforms generated by alternative splicing
    Laura M. Agosto
    Matthew R. Gazzara
    Caleb M. Radens
    Simone Sidoli
    Josue Baeza
    First Published November 14, 2019
  - AIDE: annotation-assisted isoform discovery with high precision
    Wei Vivian Li
    Shan Li
    Xin Tong
    Ling Deng
    Hubing Shi
    First Published November 6, 2019
Resources
- - Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci
    Jonathan M. Mudge
    Irwin Jungreis
    Toby Hunt
    Jose Manuel Gonzalez
    James C. Wright
    Mike Kay Claire Davidson Stephen Fitzgerald Ruth Seal Susan Tweedie Liang He Robert M. Waterhouse Yue Li
    ...[+8 authors]...,
    Elspeth Bruford
    Jyoti S. Choudhary
    Adam Frankish
    Manolis Kellis
    First Published September 19, 2019
  - Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging
    Jacob C. Kimmel
    Lolita Penland
    Nimrod D. Rubinstein
    David G. Hendrickson
    David R. Kelley
    First Published November 21, 2019
  - The C. elegans 3′ UTRome v2 resource for studying mRNA cleavage and polyadenylation, 3′-UTR biology, and miRNA targeting
    Hannah S. Steber
    Christina Gallante
    Shannon O'Brien
    Po-Lin Chiu
    Marco Mangone
    First Published November 19, 2019
Reviewer Index
- - Reviewer Index, Volume 29, 2019
    First Published December 2, 2019

Table of Contents

Volume 29, Issue 12 | December 2019

Research

Synchronized replication of genes encoding the same protein complex in fast-proliferating cells

Promoter-specific dynamics of TATA-binding protein association with the human genome

Clonal copy-number mosaicism in autoreactive T lymphocytes in diabetic NOD mice

A high-resolution gene expression atlas links dedicated meristem genes to key architectural traits

Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast

Accessibility of promoter DNA is not the primary determinant of chromatin-mediated gene regulation

Methods

Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome

Modeling Niemann–Pick disease type C in a human haploid cell line allows for patient variant characterization and clinical interpretation

Network-based hierarchical population structure analysis for large genomic data sets

Identifying gene function and module connections by the integration of multispecies expression compendia

Deep profiling and custom databases improve detection of proteoforms generated by alternative splicing

AIDE: annotation-assisted isoform discovery with high precision

Resources

Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci

Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging

The C. elegans 3′ UTRome v2 resource for studying mRNA cleavage and polyadenylation, 3′-UTR biology, and miRNA targeting

Reviewer Index

Reviewer Index, Volume 29, 2019

Table of Contents

Volume 29, Issue 12 | December 2019

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Research

Methods

Resources

Reviewer Index