Table of Contents

Research

• Select this article

  Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate

  • Wilfried M. Guiblet,
  • Marzia A. Cremona,
  • Monika Cechova,
  • Robert S. Harris,
  • Iva Kejnovská,
  • Eduard Kejnovsky,
  • Kristin Eckert,
  • Francesca Chiaromonte,
  • and Kateryna D. Makova

  Genome Res. December 2018 28: 1767-1778; Published in Advance November 6, 2018, doi:10.1101/gr.241257.118
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material

  OPEN ACCESS ARTICLE
• Select this article

  Selfish mutations dysregulating RAS-MAPK signaling are pervasive in aged human testes

  • Geoffrey J. Maher,
  • Hannah K. Ralph,
  • Zhihao Ding,
  • Nils Koelling,
  • Hana Mlcochova,
  • Eleni Giannoulatou,
  • Pawan Dhami,
  • Dirk S. Paul,
  • Stefan H. Stricker,
  • Stephan Beck,
  • Gilean McVean,
  • Andrew O.M. Wilkie,
  • and Anne Goriely

  Genome Res. December 2018 28: 1779-1790; Published in Advance October 24, 2018, doi:10.1101/gr.239186.118
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material

  OPEN ACCESS ARTICLE
• Select this article

  LTRs activated by Epstein-Barr virus–induced transformation of B cells alter the transcriptome

  • Amy Leung,
  • Candi Trac,
  • Hiroyuki Kato,
  • Kevin R. Costello,
  • Zhaoxia Chen,
  • Rama Natarajan,
  • and Dustin E. Schones

  Genome Res. December 2018 28: 1791-1798; Published in Advance October 31, 2018, doi:10.1101/gr.233585.117
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material
• Select this article

  Global transcriptional activity dynamics reveal functional enhancer RNAs

  • Yoon Jung Kim,
  • Peng Xie,
  • Lian Cao,
  • Michael Q. Zhang,
  • and Tae Hoon Kim

  Genome Res. December 2018 28: 1799-1811; Published in Advance October 23, 2018, doi:10.1101/gr.233486.117
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material

  OPEN ACCESS ARTICLE
• Select this article

  Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

  • Chun Jimmie Ye,
  • Jenny Chen,
  • Alexandra-Chloé Villani,
  • Rachel E. Gate,
  • Meena Subramaniam,
  • Tushar Bhangale,
  • Mark N. Lee,
  • Towfique Raj,
  • Raktima Raychowdhury,
  • Weibo Li,
  • Noga Rogel,
  • Sean Simmons,
  • Selina H. Imboywa,
  • Portia I. Chipendo,
  • Cristin McCabe,
  • Michelle H. Lee,
  • Irene Y. Frohlich,
  • Barbara E. Stranger,
  • Philip L. De Jager,
  • Aviv Regev,
  • Tim Behrens,
  • and Nir Hacohen

  Genome Res. December 2018 28: 1812-1825; Published in Advance November 16, 2018, doi:10.1101/gr.240390.118
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material

  OPEN ACCESS ARTICLE
• Select this article

  Ranking noncanonical 5′ splice site usage by genome-wide RNA-seq analysis and splicing reporter assays

  • Steffen Erkelenz,
  • Stephan Theiss,
  • Wolfgang Kaisers,
  • Johannes Ptok,
  • Lara Walotka,
  • Lisa Müller,
  • Frank Hillebrand,
  • Anna-Lena Brillen,
  • Michael Sladek,
  • and Heiner Schaal

  Genome Res. December 2018 28: 1826-1840; Published in Advance October 24, 2018, doi:10.1101/gr.235861.118
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material
• Select this article

  Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation

  • Wesley A. Brashear,
  • Terje Raudsepp,
  • and William J. Murphy

  Genome Res. December 2018 28: 1841-1851; Published in Advance October 31, 2018, doi:10.1101/gr.237586.118
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material
• Select this article

  Damage-responsive elements in Drosophila regeneration

  • Elena Vizcaya-Molina,
  • Cecilia C. Klein,
  • Florenci Serras,
  • Rakesh K. Mishra,
  • Roderic Guigó,
  • and Montserrat Corominas

  Genome Res. December 2018 28: 1852-1866; Published in Advance November 20, 2018, doi:10.1101/gr.233098.117
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material

  OPEN ACCESS ARTICLE
• Select this article

  Expanding heterochromatin reveals discrete subtelomeric domains delimited by chromatin landscape transitions

  • Antoine Hocher,
  • Myriam Ruault,
  • Petra Kaferle,
  • Marc Descrimes,
  • Mickaël Garnier,
  • Antonin Morillon,
  • and Angela Taddei

  Genome Res. December 2018 28: 1867-1881; Published in Advance October 24, 2018, doi:10.1101/gr.236554.118
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material
• Select this article

  Noncoding transcription influences the replication initiation program through chromatin regulation

  • Julien Soudet,
  • Jatinder Kaur Gill,
  • and Françoise Stutz

  Genome Res. December 2018 28: 1882-1893; Published in Advance November 6, 2018, doi:10.1101/gr.239582.118
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material

  OPEN ACCESS ARTICLE