Volume 27, Issue 9 | September 2017

RESEARCH
- - The evolution of duplicate gene expression in mammalian organs
    Katerina Guschanski
    Maria Warnefors
    Henrik Kaessmann
    First Published July 25, 2017
  - Genome-scale mutational signatures of aflatoxin in cells, mice, and human tumors
    Mi Ni Huang
    Willie Yu
    Wei Wei Teoh
    Maude Ardin
    Apinya Jusakul
    Alvin Wei Tian Ng Arnoud Boot Behnoush Abedi-Ardekani Stephanie Villar Swe Swe Myint Rashidah Othman Song Ling Poon Adriana Heguy Magali Olivier Monica Hollstein Patrick Tan
    ...[+11 authors]...,
    Bin Tean Teh
    Kanaga Sabapathy
    Jiri Zavadil
    Steven G. Rozen
    First Published July 24, 2017
  - Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target
    Myungjin Jo
    Ah Young Chung
    Nozomu Yachie
    Minchul Seo
    Hyejin Jeon
    Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
    ...[+4 authors]...,
    Marc Vidal
    Hae Chul Park
    Frederick P. Roth
    Kyoungho Suk
    First Published June 8, 2017
  - HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets
    Bony De Kumar
    Hugo J. Parker
    Ariel Paulson
    Mark E. Parrish
    Irina Pushel
    Narendra Pratap Singh Ying Zhang Brian D. Slaughter
    ...[+3 authors]...,
    Jay R. Unruh
    Laurence Florens
    Julia Zeitlinger
    Robb Krumlauf
    First Published August 7, 2017
  - Recruitment of histone modifications to assist mRNA dosage maintenance after degeneration of cytosine DNA methylation during animal evolution
    Andrew Ying-Fei Chang
    Ben-Yang Liao
    First Published July 18, 2017
  - Trans-splicing enhances translational efficiency in C. elegans
    Yu-Fei Yang
    Xiaoqing Zhang
    Xuehua Ma
    Taolan Zhao
    Qiushi Sun
    First Published July 6, 2017
  - Rapid evolution of female-biased genes among four species of Anopheles malaria mosquitoes
    Francesco Papa
    Nikolai Windbichler
    Robert M. Waterhouse
    Alessia Cagnetti
    Rocco D'Amato
    First Published July 26, 2017
  - A genome-wide transcriptome and translatome analysis of Arabidopsis transposons identifies a unique and conserved genome expression strategy for Ty1/Copia retroelements
    Stefan Oberlin
    Alexis Sarazin
    Clément Chevalier
    Olivier Voinnet
    Arturo Marí-Ordóñez
    First Published August 7, 2017
METHODS
- - Detecting ancient positive selection in humans using extended lineage sorting
    Stéphane Peyrégne
    Michael James Boyle
    Michael Dannemann
    Kay Prüfer
    First Published July 18, 2017
  - HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology
    Raunak Shrestha
    Ermin Hodzic
    Thomas Sauerwald
    Phuong Dao
    Kendric Wang
    Jake Yeung Shawn Anderson
    ...[+2 authors]...,
    Fabio Vandin
    Gholamreza Haffari
    Colin C. Collins
    S. Cenk Sahinalp
    First Published July 18, 2017
  - Statistically robust methylation calling for whole-transcriptome bisulfite sequencing reveals distinct methylation patterns for mouse RNAs
    Carine Legrand
    Francesca Tuorto
    Mark Hartmann
    Reinhard Liebers
    Dominik Jacob
    First Published July 6, 2017
RESOURCES
- - Assembly and analysis of 100 full MHC haplotypes from the Danish population
    Jacob M. Jensen
    Palle Villesen
    Rune M. Friborg
    Thomas Mailund
    Søren Besenbacher
    Mikkel H. Schierup Lasse Maretty Jacob Malte Jensen Bent Petersen Jonas Andreas Sibbesen Siyang Liu Palle Villesen Laurits Skov Kirstine Belling Christian Theil Have Jose M.G. Izarzugaza Marie Grosjean Jette Bork-Jensen Jakob Grove Thomas D. Als Shujia Huang Yuqi Chang Ruiqi Xu Weijian Ye Junhua Rao Xiaosen Guo Jihua Sun Hongzhi Cao Chen Ye Johan v Beusekom Thomas Espeseth Esben Flindt Rune M. Friborg Anders E. Halager Stephanie Le Hellard Christina M. Hultman Francesco Lescai Shengting Li Ole Lund Peter Løngren Thomas Mailund Maria Luisa Matey-Hernandez Ole Mors Christian N.S. Pedersen Thomas Sicheritz-Pontén Patrick Sullivan Ali Syed David Westergaard Rachita Yadav Ning Li Xun Xu Torben Hansen Anders Krogh Lars Bolund Thorkild I.A. Sørensen Oluf Pedersen Ramneek Gupta Simon Rasmussen Søren Besenbacher Anders D. Børglum Jun Wang
    ...[+56 authors]...,
    Hans Eiberg
    Karsten Kristiansen
    Søren Brunak
    Mikkel Heide Schierup
    First Published August 3, 2017
  - Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain
    Siling Liu
    Zhengbo Wang
    Dong Chen
    Bowen Zhang
    Ren-Rong Tian
    Jing Wu Ying Zhang Kaiyu Xu Liu-Meng Yang Chao Cheng Jian Ma Longbao Lv Yong-Tang Zheng
    ...[+8 authors]...,
    Xintian Hu
    Yi Zhang
    Xiangting Wang
    Jiali Li
    First Published July 7, 2017
CORRIGENDA
- - Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2
    Mario Ventura
    Claudia R. Catacchio
    Saba Sajjadian
    Laura Vives
    Peter H. Sudmant
    First Published September 1, 2017
  - Corrigendum: Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos
    Xinyi Wang
    Denghui Liu
    Dajian He
    Shengbao Suo
    Xian Xia
    First Published September 1, 2017
  - Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland
    Sandra Reuter
    M. Estée Török
    Matthew T.G. Holden
    Rosy Reynolds
    Kathy E. Raven
    Beth Blane Tjibbe Donker Stephen D. Bentley David M. Aanensen Hajo Grundmann
    ...[+5 authors]...,
    Edward J. Feil
    Brian G. Spratt
    Julian Parkhill
    Sharon J. Peacock
    First Published September 1, 2017

Table of Contents

Volume 27, Issue 9 | September 2017

RESEARCH

The evolution of duplicate gene expression in mammalian organs

Genome-scale mutational signatures of aflatoxin in cells, mice, and human tumors

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets

Recruitment of histone modifications to assist mRNA dosage maintenance after degeneration of cytosine DNA methylation during animal evolution

Trans-splicing enhances translational efficiency in C. elegans

Rapid evolution of female-biased genes among four species of Anopheles malaria mosquitoes

A genome-wide transcriptome and translatome analysis of Arabidopsis transposons identifies a unique and conserved genome expression strategy for Ty1/Copia retroelements

METHODS

Detecting ancient positive selection in humans using extended lineage sorting

HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology

Statistically robust methylation calling for whole-transcriptome bisulfite sequencing reveals distinct methylation patterns for mouse RNAs

RESOURCES

Assembly and analysis of 100 full MHC haplotypes from the Danish population

Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain

CORRIGENDA

Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

Corrigendum: Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos

Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Table of Contents

Volume 27, Issue 9 | September 2017

Share this issue

RESEARCH

METHODS

RESOURCES

CORRIGENDA