Volume 26, Issue 11 | November 2016

Research
- - Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region
    Kiana Mohajeri
    Stuart Cantsilieris
    John Huddleston
    Bradley J. Nelson
    Bradley P. Coe
    Catarina D. Campbell Carl Baker Lana Harshman Katherine M. Munson Zev N. Kronenberg Milinn Kremitzki Archana Raja Claudia Rita Catacchio
    ...[+8 authors]...,
    Tina A. Graves
    Richard K. Wilson
    Mario Ventura
    Evan E. Eichler
    First Published October 7, 2016
  - Genome-wide repression of eRNA and target gene loci by the ETV6-RUNX1 fusion in acute leukemia
    Susanna Teppo
    Saara Laukkanen
    Thomas Liuksiala
    Jessica Nordlund
    Mikko Oittinen
    Kaisa Teittinen Toni Grönroos Pascal St-Onge Daniel Sinnett Ann-Christine Syvänen
    ...[+5 authors]...,
    Matti Nykter
    Keijo Viiri
    Merja Heinäniemi
    Olli Lohi
    First Published September 12, 2016
  - Binding of nuclear factor κB to noncanonical consensus sites reveals its multimodal role during the early inflammatory response
    Petros Kolovos
    Theodore Georgomanolis
    Anna Koeferle
    Joshua D. Larkin
    Lilija Brant
    Miloš Nikolicć Eduardo G. Gusmao Anne Zirkel Tobias A. Knoch Wilfred F. van Ijcken
    ...[+5 authors]...,
    Peter R. Cook
    Ivan G. Costa
    Frank G. Grosveld
    Argyris Papantonis
    First Published September 15, 2016
  - Imprints and DPPA3 are bypassed during pluripotency- and differentiation-coupled methylation reprogramming in testicular germ cell tumors
    J. Keith Killian
    Lambert C.J. Dorssers
    Britton Trabert
    Ad J.M. Gillis
    Michael B. Cook
    Yonghong Wang Joshua J. Waterfall Holly Stevenson William I. Smith Natalia Noyes Parvathy Retnakumar J. Hans Stoop
    ...[+7 authors]...,
    J. Wolter Oosterhuis
    Paul S. Meltzer
    Katherine A. McGlynn
    Leendert H.J. Looijenga
    First Published October 20, 2016
  - Reconstructed cell fate–regulatory programs in stem cells reveal hierarchies and key factors of neurogenesis
    Marco-Antonio Mendoza-Parra
    Valeriya Malysheva
    Mohamed Ashick Mohamed Saleem
    Michele Lieb
    Aurelie Godel
    First Published September 20, 2016
  - DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity
    Steven R. Eichten
    Tim Stuart
    Akanksha Srivastava
    Ryan Lister
    Justin O. Borevitz
    First Published September 9, 2016
  - Nucleosomal signatures impose nucleosome positioning in coding and noncoding sequences in the genome
    Sara González
    Alicia García
    Enrique Vázquez
    Rebeca Serrano
    Mar Sánchez
    First Published September 23, 2016
  - RNA–DNA sequence differences in Saccharomyces cerevisiae
    Isabel X. Wang
    Christopher Grunseich
    Youree G. Chung
    Hojoong Kwak
    Girish Ramrattan
    First Published September 16, 2016
  - Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently
    Sophia David
    Christophe Rusniok
    Massimo Mentasti
    Laura Gomez-Valero
    Simon R. Harris
    Pierre Lechat John Lees Christophe Ginevra Philippe Glaser Laurence Ma Christiane Bouchier Anthony Underwood
    ...[+7 authors]...,
    Sophie Jarraud
    Timothy G. Harrison
    Julian Parkhill
    Carmen Buchrieser
    First Published September 23, 2016
Methods
- - Direct chromosome-length haplotyping by single-cell sequencing
    David Porubský
    Ashley D. Sanders
    Niek van Wietmarschen
    Ester Falconer
    Mark Hills
    First Published September 19, 2016
  - Characterizing polymorphic inversions in human genomes by single-cell sequencing
    Ashley D. Sanders
    Mark Hills
    David Porubský
    Victor Guryev
    Ester Falconer
    First Published July 29, 2016
  - A generic, cost-effective, and scalable cell lineage analysis platform
    Tamir Biezuner
    Adam Spiro
    Ofir Raz
    Shiran Amir
    Lilach Milo
    Rivka Adar Noa Chapal-Ilani Veronika Berman Yael Fried Elena Ainbinder
    ...[+5 authors]...,
    Galit Cohen
    Haim M. Barr
    Ruth Halaban
    Ehud Shapiro
    First Published August 24, 2016
  - Quantification of in vivo progenitor mutation accrual with ultra-low error rate and minimal input DNA using SIP-HAVA-seq
    Pete H. Taylor
    Amanda Cinquin
    Olivier Cinquin
    First Published October 19, 2016
  - An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
    Stephen Nayfach
    Beltran Rodriguez-Mueller
    Nandita Garud
    Katherine S. Pollard
    First Published October 18, 2016
Corrigendum
- - Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal
    Juan L. Mateo
    Debbie L.C. van den Berg
    Maximilian Haeussler
    Daniela Drechsel
    Zachary B. Gaber
    Diogo S. Castro Paul Robson Q. Richard Lu Gregory E. Crawford Paul Flicek
    ...[+5 authors]...,
    Laurence Ettwiller
    Joachim Wittbrodt
    François Guillemot
    Ben Martynoga
    First Published November 1, 2016

Table of Contents

Volume 26, Issue 11 | November 2016

Research

Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region

Genome-wide repression of eRNA and target gene loci by the ETV6-RUNX1 fusion in acute leukemia

Binding of nuclear factor κB to noncanonical consensus sites reveals its multimodal role during the early inflammatory response

Imprints and DPPA3 are bypassed during pluripotency- and differentiation-coupled methylation reprogramming in testicular germ cell tumors

Reconstructed cell fate–regulatory programs in stem cells reveal hierarchies and key factors of neurogenesis

DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity

Nucleosomal signatures impose nucleosome positioning in coding and noncoding sequences in the genome

RNA–DNA sequence differences in Saccharomyces cerevisiae

Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently

Methods

Direct chromosome-length haplotyping by single-cell sequencing

Characterizing polymorphic inversions in human genomes by single-cell sequencing

A generic, cost-effective, and scalable cell lineage analysis platform

Quantification of in vivo progenitor mutation accrual with ultra-low error rate and minimal input DNA using SIP-HAVA-seq

An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography

Corrigendum

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

Table of Contents

Volume 26, Issue 11 | November 2016

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Research

Methods

Corrigendum