Volume 26, Issue 1 | January 2016

Research
- - Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)
    Gang Li
    Brian W. Davis
    Eduardo Eizirik
    William J. Murphy
    First Published October 30, 2015
  - RNA structure replaces the need for U2AF2 in splicing
    Chien-Ling Lin
    Allison J. Taggart
    Kian Huat Lim
    Kamil J. Cygan
    Luciana Ferraris
    First Published November 13, 2015
  - Subcellular RNA profiling links splicing and nuclear DICER1 to alternative cleavage and polyadenylation
    Jonathan Neve
    Kaspar Burger
    Wencheng Li
    Mainul Hoque
    Radhika Patel
    First Published November 6, 2015
  - SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes
    Yue Shen
    Giovanni Stracquadanio
    Yun Wang
    Kun Yang
    Leslie A. Mitchell
    Yaxin Xue Yizhi Cai Tai Chen Jessica S. Dymond Kang Kang Jianhui Gong Xiaofan Zeng Yongfen Zhang Yingrui Li Qiang Feng Xun Xu Jun Wang
    ...[+12 authors]...,
    Jian Wang
    Huanming Yang
    Jef D. Boeke
    Joel S. Bader
    First Published November 13, 2015
  - Nascent RNA folding mitigates transcription-associated mutagenesis
    Xiaoshu Chen
    Jian-Rong Yang
    Jianzhi Zhang
    First Published October 30, 2015
  - High mutational rates of large-scale duplication and deletion in Daphnia pulex
    Nathan Keith
    Abraham E. Tucker
    Craig E. Jackson
    Way Sung
    José Ignacio Lucas Lledó
    Daniel R. Schrider Sarah Schaack Jeffry L. Dudycha
    ...[+3 authors]...,
    Matthew Ackerman
    Andrew J. Younge
    Joseph R. Shaw
    Michael Lynch
    First Published October 30, 2015
  - Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains
    Sergey V. Ulianov
    Ekaterina E. Khrameeva
    Alexey A. Gavrilov
    Ilya M. Flyamer
    Pavel Kos
    Elena A. Mikhaleva Aleksey A. Penin Maria D. Logacheva Maxim V. Imakaev
    ...[+4 authors]...,
    Alexander Chertovich
    Mikhail S. Gelfand
    Yuri Y. Shevelyov
    Sergey V. Razin
    First Published October 30, 2015
  - MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    Maria Ninova
    Matthew Ronshaugen
    Sam Griffiths-Jones
    First Published October 30, 2015
  - Loss of HP1 causes depletion of H3K27me3 from facultative heterochromatin and gain of H3K27me2 at constitutive heterochromatin
    Kirsty Jamieson
    Elizabeth T. Wiles
    Kevin J. McNaught
    Simone Sidoli
    Neena Leggett
    First Published November 4, 2015
Methods
- - INTEGRATE: gene fusion discovery using whole genome and transcriptome data
    Jin Zhang
    Nicole M. White
    Heather K. Schmidt
    Robert S. Fulton
    Chad Tomlinson
    First Published November 10, 2015
  - RNA sequencing of Sleeping Beauty transposon-induced tumors detects transposon-RNA fusions in forward genetic cancer screens
    Nuri A. Temiz
    Branden S. Moriarity
    Natalie K. Wolf
    Jesse D. Riordan
    Adam J. Dupuy
    First Published November 9, 2015
Resources
- - The pig X and Y Chromosomes: structure, sequence, and evolution
    Benjamin M. Skinner
    Carole A. Sargent
    Carol Churcher
    Toby Hunt
    Javier Herrero
    Jane E. Loveland Matt Dunn Sandra Louzada Beiyuan Fu William Chow James Gilbert Siobhan Austin-Guest Kathryn Beal Denise Carvalho-Silva William Cheng Daria Gordon Darren Grafham Matt Hardy Jo Harley Heidi Hauser Philip Howden Kerstin Howe Kim Lachani Peter J.I. Ellis Daniel Kelly Giselle Kerry James Kerwin Bee Ling Ng Glen Threadgold Thomas Wileman Jonathan M.D. Wood
    ...[+26 authors]...,
    Fengtang Yang
    Jen Harrow
    Nabeel A. Affara
    Chris Tyler-Smith
    First Published November 11, 2015
  - Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis
    Rui Yokomori
    Kotaro Shimai
    Koki Nishitsuji
    Yutaka Suzuki
    Takehiro G. Kusakabe
    First Published December 14, 2015

Table of Contents

Volume 26, Issue 1 | January 2016

Research

Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)

RNA structure replaces the need for U2AF2 in splicing

Subcellular RNA profiling links splicing and nuclear DICER1 to alternative cleavage and polyadenylation

SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes

Nascent RNA folding mitigates transcription-associated mutagenesis

High mutational rates of large-scale duplication and deletion in Daphnia pulex

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains

MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum

Loss of HP1 causes depletion of H3K27me3 from facultative heterochromatin and gain of H3K27me2 at constitutive heterochromatin

Methods

INTEGRATE: gene fusion discovery using whole genome and transcriptome data

RNA sequencing of Sleeping Beauty transposon-induced tumors detects transposon-RNA fusions in forward genetic cancer screens

Resources

The pig X and Y Chromosomes: structure, sequence, and evolution

Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis

Table of Contents

Volume 26, Issue 1 | January 2016

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Research

Methods

Resources