Volume 25, Issue 12 | December 2015

Research
- - SORBS2 transcription is activated by telomere position effect–over long distance upon telomere shortening in muscle cells from patients with facioscapulohumeral dystrophy
    Jérôme D. Robin
    Andrew T. Ludlow
    Kimberly Batten
    Marie-Cécile Gaillard
    Guido Stadler
    Frédérique Magdinier
    Woodring E. Wright
    Jerry W. Shay
    First Published September 10, 2015
  - Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites
    Daniel Savic
    Brian S. Roberts
    Julia B. Carleton
    E. Christopher Partridge
    Michael A. White
    Barak A. Cohen
    Gregory M. Cooper
    Jason Gertz
    Richard M. Myers
    First Published October 20, 2015
  - Bacterial infection remodels the DNA methylation landscape of human dendritic cells
    Alain Pacis
    Ludovic Tailleux
    Alexander M. Morin
    John Lambourne
    Julia L. MacIsaac
    Vania Yotova Anne Dumaine Anne Danckaert Francesca Luca Jean-Christophe Grenier Kasper D. Hansen Brigitte Gicquel Miao Yu Athma Pai Chuan He Jenny Tung Tomi Pastinen
    ...[+12 authors]...,
    Michael S. Kobor
    Roger Pique-Regi
    Yoav Gilad
    Luis B. Barreiro
    First Published September 21, 2015
  - CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors
    Kosuke Hashimoto
    Ana Maria Suzuki
    Alexandre Dos Santos
    Christophe Desterke
    Agnese Collino
    Serena Ghisletti Emilie Braun Alessandro Bonetti Alexandre Fort Xian-Yang Qin Enrico Radaelli Bogumil Kaczkowski Alistair R.R. Forrest Soichi Kojima Didier Samuel
    ...[+10 authors]...,
    Gioacchino Natoli
    Marie Annick Buendia
    Jamila Faivre
    Piero Carninci
    First Published October 28, 2015
  - Prepatterning of differentiation-driven nuclear lamin A/C-associated chromatin domains by GlcNAcylated histone H2B
    Torunn Rønningen
    Akshay Shah
    Anja R. Oldenburg
    Kristin Vekterud
    Erwan Delbarre
    Jan Øivind Moskaug
    Philippe Collas
    First Published September 10, 2015
  - Ribosome profiling reveals an important role for translational control in circadian gene expression
    Christopher Jang
    Nicholas F. Lahens
    John B. Hogenesch
    Amita Sehgal
    First Published September 3, 2015
  - Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames
    Peggy Janich
    Alaaddin Bulak Arpat
    Violeta Castelo-Szekely
    Maykel Lopes
    David Gatfield
    First Published October 20, 2015
  - Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells
    Monika S. Kowalczyk
    Itay Tirosh
    Dirk Heckl
    Tata Nageswara Rao
    Atray Dixit
    Brian J. Haas
    ...[+1 authors]...,
    Rebekka K. Schneider
    Amy J. Wagers
    Benjamin L. Ebert
    Aviv Regev
    First Published October 1, 2015
  - The chromatin environment shapes DNA replication origin organization and defines origin classes
    Christelle Cayrou
    Benoit Ballester
    Isabelle Peiffer
    Romain Fenouil
    Philippe Coulombe
    Jean-Christophe Andrau
    Jacques van Helden
    Marcel Méchali
    First Published November 11, 2015
  - Replication timing is regulated by the number of MCMs loaded at origins
    Shankar P. Das
    Tyler Borrman
    Victor W.T. Liu
    Scott C.-H. Yang
    John Bechhoefer
    Nicholas Rhind
    First Published September 10, 2015
  - Noise in gene expression is coupled to growth rate
    Leeat Keren
    David van Dijk
    Shira Weingarten-Gabbay
    Dan Davidi
    Ghil Jona
    Adina Weinberger
    Ron Milo
    Eran Segal
    First Published September 9, 2015
Methods
- - A probabilistic method for testing and estimating selection differences between populations
    Yungang He
    Minxian Wang
    Xin Huang
    Ran Li
    Hongyang Xu
    Shuhua Xu
    Li Jin
    First Published October 13, 2015
  - Enhanced virome sequencing using targeted sequence capture
    Todd N. Wylie
    Kristine M. Wylie
    Brandi N. Herter
    Gregory A. Storch
    First Published September 22, 2015
Resource
- - The genome of the vervet (Chlorocebus aethiops sabaeus)
    Warren Wesley C.
    Jasinska Anna J.
    García-Pérez Raquel
    Svardal Hannes
    Tomlinson Chad
    Rocchi Mariano Archidiacono Nicoletta Capozzi Oronzo Minx Patrick Montague Michael J. Kyung Kim Hillier LaDeana W. Kremitzki Milinn Graves Tina Chiang Colby Hughes Jennifer Tran Nam Huang Yu Ramensky Vasily Choi Oi-wa Jung Yoon J. Schmitt Christopher A. Juretic Nikoleta Wasserscheid Jessica Turner Trudy R. Wiseman Roger W. Tuscher Jennifer J. Karl Julie A. Schmitz Jörn E. Zahn Roland O'Connor David H. Redmond Eugene Nisbett Alex Jacquelin Béatrice Müller-Trutwin Michaela C. Brenchley Jason M. Dione Michel Antonio Martin Schroth Gary P. Kaplan Jay R. Jorgensen Matthew J. Thomas Gregg W.C. Hahn Matthew W. Raney Brian J. Aken Bronwen Nag Rishi Schmitz Juergen Churakov Gennady Noll Angela Stanyon Roscoe Webb David Thibaud-Nissen Francoise Nordborg Magnus Marques-Bonet Tomas
    ...[+49 authors]...,
    Dewar Ken
    Weinstock George M.
    Wilson Richard K.
    Freimer Nelson B.
    First Published September 16, 2015
Author Index
- - Author Index, Volume 25, 2015
    First Published December 1, 2015
Reviewer Index
- - Reviewer Index, Volume 25, 2015
    First Published December 1, 2015

Table of Contents

Volume 25, Issue 12 | December 2015

Research

SORBS2 transcription is activated by telomere position effect–over long distance upon telomere shortening in muscle cells from patients with facioscapulohumeral dystrophy

Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites

Bacterial infection remodels the DNA methylation landscape of human dendritic cells

CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors

Prepatterning of differentiation-driven nuclear lamin A/C-associated chromatin domains by GlcNAcylated histone H2B

Ribosome profiling reveals an important role for translational control in circadian gene expression

Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames

Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

The chromatin environment shapes DNA replication origin organization and defines origin classes

Replication timing is regulated by the number of MCMs loaded at origins

Noise in gene expression is coupled to growth rate

Methods

A probabilistic method for testing and estimating selection differences between populations

Enhanced virome sequencing using targeted sequence capture

Resource

The genome of the vervet (Chlorocebus aethiops sabaeus)

Author Index

Author Index, Volume 25, 2015

Reviewer Index

Reviewer Index, Volume 25, 2015

Table of Contents

Volume 25, Issue 12 | December 2015

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Research

Methods

Resource

Author Index

Reviewer Index