Volume 25, Issue 7 | July 2015

Research
- - The landscape of genomic imprinting across diverse adult human tissues
    Yael Baran
    Meena Subramaniam
    Anne Biton
    Taru Tukiainen
    Emily K. Tsang
    Manuel A. Rivas Matti Pirinen Maria Gutierrez-Arcelus Kevin S. Smith Kim R. Kukurba Rui Zhang Celeste Eng Dara G. Torgerson Cydney Urbanek Jin Billy Li Jose R. Rodriguez-Santana Esteban G. Burchard Max A. Seibold
    ...[+13 authors]...,
    Daniel G. MacArthur
    Stephen B. Montgomery
    Noah A. Zaitlen
    Tuuli Lappalainen
    First Published May 7, 2015
  - Unbalanced translocations arise from diverse mutational mechanisms including chromothripsis
    Brooke Weckselblatt
    Karen E. Hermetz
    M. Katharine Rudd
    First Published June 12, 2015
  - Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders
    Heather Fairfield
    Anuj Srivastava
    Guruprasad Ananda
    Rangjiao Liu
    Martin Kircher
    Anuradha Lakshminarayana Belinda S. Harris Son Yong Karst Louise A. Dionne Coleen C. Kane Michelle Curtain Melissa L. Berry Patricia F. Ward-Bailey Ian Greenstein Candice Byers Anne Czechanski Jocelyn Sharp Kristina Palmer Polyxeni Gudis Whitney Martin Abby Tadenev Laurent Bogdanik C. Herbert Pratt Bo Chang David G. Schroeder Gregory A. Cox Paul Cliften Jeffrey Milbrandt Stephen Murray Robert Burgess David E. Bergstrom Leah Rae Donahue Hanan Hamamy Amira Masri Federico A. Santoni
    ...[+30 authors]...,
    Periklis Makrythanasis
    Stylianos E. Antonarakis
    Jay Shendure
    Laura G. Reinholdt
    First Published April 27, 2015
  - Characterization and dynamics of pericentromere-associated domains in mice
    Patrick J. Wijchers
    Geert Geeven
    Michael Eyres
    Atze J. Bergsma
    Mark Janssen
    Marjon Verstegen Yun Zhu
    ...[+2 authors]...,
    Yori Schell
    Carlo Vermeulen
    Elzo de Wit
    Wouter de Laat
    First Published April 16, 2015
  - Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations
    Mirte Bosse
    Hendrik-Jan Megens
    Ole Madsen
    Richard P.M.A. Crooijmans
    Oliver A. Ryder
    First Published June 10, 2015
  - Coordinated tissue-specific regulation of adjacent alternative 3′ splice sites in C. elegans
    James Matthew Ragle
    Sol Katzman
    Taylor F. Akers
    Sergio Barberan-Soler
    Alan M. Zahler
    First Published April 28, 2015
  - Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity
    Yamile Marquez
    Markus Höpfler
    Zahra Ayatollahi
    Andrea Barta
    Maria Kalyna
    First Published May 1, 2015
  - Core promoter sequence in yeast is a major determinant of expression level
    Shai Lubliner
    Ifat Regev
    Maya Lotan-Pompan
    Sarit Edelheit
    Adina Weinberger
    First Published May 12, 2015
Methods
- - Unraveling determinants of transcription factor binding outside the core binding site
    Michal Levo
    Einat Zalckvar
    Eilon Sharon
    Ana Carolina Dantas Machado
    Yael Kalma
    Maya Lotam-Pompan
    ...[+1 authors]...,
    Adina Weinberger
    Zohar Yakhini
    Remo Rohs
    Eran Segal
    First Published March 11, 2015
  - High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9
    Gaurav K. Varshney
    Wuhong Pei
    Matthew C. LaFave
    Jennifer Idol
    Lisha Xu
    Viviana Gallardo Blake Carrington Kevin Bishop MaryPat Jones Mingyu Li Ursula Harper Sunny C. Huang Anupam Prakash
    ...[+8 authors]...,
    Wenbiao Chen
    Raman Sood
    Johan Ledin
    Shawn M. Burgess
    First Published June 5, 2015
  - CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
    Donovan H. Parks
    Michael Imelfort
    Connor T. Skennerton
    Philip Hugenholtz
    Gene W. Tyson
    First Published May 14, 2015
Resources
- - Using populations of human and microbial genomes for organism detection in metagenomes
    Sasha K. Ames
    Shea N. Gardner
    Jose Manuel Marti
    Tom R. Slezak
    Maya B. Gokhale
    First Published April 29, 2015
  - The landscape of antisense gene expression in human cancers
    O. Alejandro Balbin
    Rohit Malik
    Saravana M. Dhanasekaran
    John R. Prensner
    Xuhong Cao
    Yi-Mi Wu Dan Robinson Rui Wang
    ...[+3 authors]...,
    Guoan Chen
    David G. Beer
    Alexey I. Nesvizhskii
    Arul M. Chinnaiyan
    First Published June 10, 2015

Table of Contents

Volume 25, Issue 7 | July 2015

Research

The landscape of genomic imprinting across diverse adult human tissues

Unbalanced translocations arise from diverse mutational mechanisms including chromothripsis

Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders

Characterization and dynamics of pericentromere-associated domains in mice

Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations

Coordinated tissue-specific regulation of adjacent alternative 3′ splice sites in C. elegans

Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity

Core promoter sequence in yeast is a major determinant of expression level

Methods

Unraveling determinants of transcription factor binding outside the core binding site

High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Resources

Using populations of human and microbial genomes for organism detection in metagenomes

The landscape of antisense gene expression in human cancers

Table of Contents

Volume 25, Issue 7 | July 2015

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Research

Methods

Resources