Volume 25, Issue 5 | May 2015

Research
- - Germline and somatic imprinting in the nonhuman primate highlights species differences in oocyte methylation
    Clara Y. Cheong
    Keefe Chng
    Shilen Ng
    Siew Boom Chew
    Louiza Chan
    First Published April 10, 2015
  - Evidence for widespread subfunctionalization of splice forms in vertebrate genomes
    Matthew J. Lambert
    Wayne O. Cochran
    Brandon M. Wilde
    Kyle G. Olsen
    Cynthia D. Cooper
    First Published March 19, 2015
  - Global variability in gene expression and alternative splicing is modulated by mitochondrial content
    Raul Guantes
    Alberto Rastrojo
    Ricardo Neves
    Ana Lima
    Begoña Aguado
    First Published March 23, 2015
  - Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans
    Éric Zampini
    Étienne Lepage
    Samuel Tremblay-Belzile
    Sébastien Truche
    Normand Brisson
    First Published March 23, 2015
  - Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells
    Jennifer Y. Tan
    Tamara Sirey
    Frantisek Honti
    Bryony Graham
    Allison Piovesan
    First Published March 19, 2015
  - Full-genome evolutionary histories of selfing, splitting, and selection in Caenorhabditis
    Cristel G. Thomas
    Wei Wang
    Richard Jovelin
    Rajarshi Ghosh
    Tatiana Lomasko
    First Published March 17, 2015
  - New signaling pathways govern the host response to C. albicans infection in various niches
    Yaoping Liu
    Amol C. Shetty
    Jennifer A. Schwartz
    L. Latey Bradford
    Wenjie Xu
    Qyunh T. Phan Priti Kumari Anup Mahurkar Aaron P. Mitchell
    ...[+4 authors]...,
    Jacques Ravel
    Claire M. Fraser
    Scott G. Filler
    Vincent M. Bruno
    First Published April 9, 2015
Methods
- - Model-driven mapping of transcriptional networks reveals the circuitry and dynamics of virulence regulation
    Ezekiel J. Maier
    Brian C. Haynes
    Stacey R. Gish
    Zhuo A. Wang
    Michael L. Skowyra
    First Published February 2, 2015
  - Systematic interaction network filtering identifies CRMP1 as a novel suppressor of huntingtin misfolding and neurotoxicity
    Martin Stroedicke
    Yacine Bounab
    Nadine Strempel
    Konrad Klockmeier
    Sargon Yigit
    Ralf P. Friedrich Gautam Chaurasia Shuang Li Franziska Hesse Sean-Patrick Riechers Jenny Russ Cecilia Nicoletti Annett Boeddrich Thomas Wiglenda Christian Haenig Sigrid Schnoegl David Fournier Rona K. Graham Michael R. Hayden Stephan Sigrist Gillian P. Bates
    ...[+16 authors]...,
    Josef Priller
    Miguel A. Andrade-Navarro
    Matthias E. Futschik
    Erich E. Wanker
    First Published April 23, 2015
  - Optimizing sparse sequencing of single cells for highly multiplex copy number profiling
    Timour Baslan
    Jude Kendall
    Brian Ward
    Hilary Cox
    Anthony Leotta
    Linda Rodgers Michael Riggs Sean D'Italia Guoli Sun Mao Yong Kristy Miskimen Hannah Gilmore Michael Saborowski Nevenka Dimitrova
    ...[+9 authors]...,
    Alexander Krasnitz
    Lyndsay Harris
    Michael Wigler
    James Hicks
    First Published April 9, 2015
  - Characterizing and controlling intrinsic biases of lambda exonuclease in nascent strand sequencing reveals phasing between nucleosomes and G-quadruplex motifs around a subset of human replication origins
    Michael S. Foulk
    John M. Urban
    Cinzia Casella
    Susan A. Gerbi
    First Published February 18, 2015
  - Accurate typing of short tandem repeats from genome-wide sequencing data and its applications
    Arkarachai Fungtammasan
    Guruprasad Ananda
    Suzanne E. Hile
    Marcia Shu-Wei Su
    Chen Sun
    First Published March 30, 2015
  - MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals
    Keisha D. Carlson
    Peter H. Sudmant
    Maximilian O. Press
    Evan E. Eichler
    Jay Shendure
    First Published February 6, 2015
Resource
- - The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
    Pooja K. Strope
    Daniel A. Skelly
    Stanislav G. Kozmin
    Gayathri Mahadevan
    Eric A. Stone
    First Published April 3, 2015

Table of Contents

Volume 25, Issue 5 | May 2015

Research

Germline and somatic imprinting in the nonhuman primate highlights species differences in oocyte methylation

Evidence for widespread subfunctionalization of splice forms in vertebrate genomes

Global variability in gene expression and alternative splicing is modulated by mitochondrial content

Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans

Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells

Full-genome evolutionary histories of selfing, splitting, and selection in Caenorhabditis

New signaling pathways govern the host response to C. albicans infection in various niches

Methods

Model-driven mapping of transcriptional networks reveals the circuitry and dynamics of virulence regulation

Systematic interaction network filtering identifies CRMP1 as a novel suppressor of huntingtin misfolding and neurotoxicity

Optimizing sparse sequencing of single cells for highly multiplex copy number profiling

Characterizing and controlling intrinsic biases of lambda exonuclease in nascent strand sequencing reveals phasing between nucleosomes and G-quadruplex motifs around a subset of human replication origins

Accurate typing of short tandem repeats from genome-wide sequencing data and its applications

MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

Resource

The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen

Table of Contents

Volume 25, Issue 5 | May 2015

Share this issue

Research

Methods

Resource