Volume 25, Issue 1 | January 2015

Research
- - RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts
    Yang I. Li
    Luis Sanchez-Pulido
    Wilfried Haerty
    Chris P. Ponting
    First Published December 18, 2014
  - U2AF1 mutations alter splice site recognition in hematological malignancies
    Janine O. Ilagan
    Aravind Ramakrishnan
    Brian Hayes
    Michele E. Murphy
    Ahmad S. Zebari
    First Published September 29, 2014
  - H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells
    Agustín F. Fernández
    Gustavo F. Bayón
    Rocío G. Urdinguio
    Estela G. Toraño
    María G. García
    Antonella Carella Sandra Petrus-Reurer Cecilia Ferrero Pablo Martinez-Camblor Isabel Cubillo Javier García-Castro Jesús Delgado-Calle Flor M. Pérez-Campo José A. Riancho Clara Bueno Pablo Menéndez Anouk Mentink Katia Mareschi Fabian Claire Corrado Fagnani Emanuela Medda Virgilia Toccaceli Sonia Brescianini Sebastián Moran Manel Esteller Alexandra Stolzing
    ...[+21 authors]...,
    Jan de Boer
    Lorenza Nisticò
    Maria A. Stazi
    Mario F. Fraga
    First Published September 30, 2014
  - Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal
    Juan L. Mateo
    Debbie L.C. van den Berg
    Maximilian Haeussler
    Daniela Drechsel
    Zachary B. Gaber
    Diogo S. Castro Paul Robson Q. Richard Lu Gregory E. Crawford Paul Flicek
    ...[+5 authors]...,
    Laurence Ettwiller
    Joachim Wittbrodt
    François Guillemot
    Ben Martynoga
    First Published October 7, 2014
  - Shroom3 contributes to the maintenance of the glomerular filtration barrier integrity
    Nan Cher Yeo
    Caitlin C. O’Meara
    Jason A. Bonomo
    Kerry N. Veth
    Ritu Tomar
    Michael J. Flister Iain A. Drummond Donald W. Bowden
    ...[+3 authors]...,
    Barry I. Freedman
    Jozef Lazar
    Brian A. Link
    Howard J. Jacob
    First Published October 1, 2014
  - Profiling the RNA editomes of wild-type C. elegans and ADAR mutants
    Han-Qing Zhao
    Pan Zhang
    Hua Gao
    Xiandong He
    Yanmei Dou
    August Y. Huang
    ...[+1 authors]...,
    Xi-Ming Liu
    Adam Y. Ye
    Meng-Qiu Dong
    Liping Wei
    First Published November 4, 2014
  - Defining heterochromatin in C. elegans through genome-wide analysis of the heterochromatin protein 1 homolog HPL-2
    Jacob M. Garrigues
    Simone Sidoli
    Benjamin A. Garcia
    Susan Strome
    First Published December 2, 2014
  - Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin
    Oksana Maksimenko
    Marek Bartkuhn
    Viacheslav Stakhov
    Martin Herold
    Nickolay Zolotarev
    Theresa Jox Melanie K. Buxa Ramona Kirsch Artem Bonchuk
    ...[+4 authors]...,
    Anna Fedotova
    Olga Kyrchanova
    Rainer Renkawitz
    Pavel Georgiev
    First Published October 23, 2014
  - Intron evolution in Neurospora: the role of mutational bias and selection
    Yu Sun
    Carrie A. Whittle
    Pádraic Corcoran
    Hanna Johannesson
    First Published October 23, 2014
  - Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting
    Steven Y.C. Tong
    Matthew T.G. Holden
    Emma K. Nickerson
    Ben S. Cooper
    Claudio U. Köser
    Anne Cori Thibaut Jombart Simon Cauchemez Christophe Fraser Vanaporn Wuthiekanun Janjira Thaipadungpanit Maliwan Hongsuwan
    ...[+7 authors]...,
    Nicholas P. Day
    Direk Limmathurotsakul
    Julian Parkhill
    Sharon J. Peacock
    First Published December 9, 2014
  - Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains
    Stephen J. Salipante
    David J. Roach
    Jacob O. Kitzman
    Matthew W. Snyder
    Bethany Stackhouse
    First Published November 4, 2014
  - Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles
    Tannistha Nandi
    Matthew T.G. Holden
    Xavier Didelot
    Kurosh Mehershahi
    Justin A. Boddey
    Ifor Beacham Ian Peak John Harting Primo Baybayan Yan Guo Susana Wang Lee Chee How Bernice Sim Angela Essex-Lopresti Mitali Sarkar-Tyson Michelle Nelson Sophie Smither Catherine Ong Lay Tin Aw Chua Hui Hoon Stephen Michell David J. Studholme
    ...[+17 authors]...,
    Richard Titball
    Swaine L. Chen
    Julian Parkhill
    Patrick Tan
    First Published September 18, 2014
Method
- - The discovery of integrated gene networks for autism and related disorders
    Fereydoun Hormozdiari
    Osnat Penn
    Elhanan Borenstein
    Evan E. Eichler
    First Published November 5, 2014

Table of Contents

Volume 25, Issue 1 | January 2015

Research

RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts

U2AF1 mutations alter splice site recognition in hematological malignancies

H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells

Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

Shroom3 contributes to the maintenance of the glomerular filtration barrier integrity

Profiling the RNA editomes of wild-type C. elegans and ADAR mutants

Defining heterochromatin in C. elegans through genome-wide analysis of the heterochromatin protein 1 homolog HPL-2

Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin

Intron evolution in Neurospora: the role of mutational bias and selection

Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting

Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles

Method

The discovery of integrated gene networks for autism and related disorders

Table of Contents

Volume 25, Issue 1 | January 2015

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Research

Method