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Research

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  Genome-wide signals of positive selection in human evolution

  • David Enard,
  • Philipp W. Messer,
  • and Dmitri A. Petrov

  Genome Res. June 2014 24: 885-895; Published in Advance March 11, 2014, doi:10.1101/gr.164822.113
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  Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications

  • Artur Veloso,
  • Killeen S. Kirkconnell,
  • Brian Magnuson,
  • Benjamin Biewen,
  • Michelle T. Paulsen,
  • Thomas E. Wilson,
  • and Mats Ljungman

  Genome Res. June 2014 24: 896-905; Published in Advance April 8, 2014, doi:10.1101/gr.171405.113
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  Widespread context dependency of microRNA-mediated regulation

  • Florian Erhard,
  • Jürgen Haas,
  • Diana Lieber,
  • Georg Malterer,
  • Lukasz Jaskiewicz,
  • Mihaela Zavolan,
  • Lars Dölken,
  • and Ralf Zimmer

  Genome Res. June 2014 24: 906-919; Published in Advance March 25, 2014, doi:10.1101/gr.166702.113
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  Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis

  • Catia Attanasio,
  • Alex S. Nord,
  • Yiwen Zhu,
  • Matthew J. Blow,
  • Simon C. Biddie,
  • Eric M. Mendenhall,
  • Jesse Dixon,
  • Crystal Wright,
  • Roya Hosseini,
  • Jennifer A. Akiyama,
  • Amy Holt,
  • Ingrid Plajzer-Frick,
  • Malak Shoukry,
  • Veena Afzal,
  • Bing Ren,
  • Bradley E. Bernstein,
  • Edward M. Rubin,
  • Axel Visel,
  • and Len A. Pennacchio

  Genome Res. June 2014 24: 920-929; Published in Advance April 21, 2014, doi:10.1101/gr.168930.113
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  Inputs drive cell phenotype variability

  • James Park,
  • Anthony Brureau,
  • Kate Kernan,
  • Alexandria Starks,
  • Sonali Gulati,
  • Babatunde Ogunnaike,
  • James Schwaber,
  • and Rajanikanth Vadigepalli

  Genome Res. June 2014 24: 930-941; Published in Advance March 26, 2014, doi:10.1101/gr.161802.113
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  Natural variation of histone modification and its impact on gene expression in the rat genome

  • Carola Rintisch,
  • Matthias Heinig,
  • Anja Bauerfeind,
  • Sebastian Schafer,
  • Christin Mieth,
  • Giannino Patone,
  • Oliver Hummel,
  • Wei Chen,
  • Stuart Cook,
  • Edwin Cuppen,
  • Maria Colomé-Tatché,
  • Frank Johannes,
  • Ritsert C. Jansen,
  • Helen Neil,
  • Michel Werner,
  • Michal Pravenec,
  • Martin Vingron,
  • and Norbert Hubner

  Genome Res. June 2014 24: 942-953; Published in Advance May 2, 2014, doi:10.1101/gr.169029.113
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  Polymerase theta-mediated end joining of replication-associated DNA breaks in C. elegans

  • Sophie F. Roerink,
  • Robin van Schendel,
  • and Marcel Tijsterman

  Genome Res. June 2014 24: 954-962; Published in Advance March 10, 2014, doi:10.1101/gr.170431.113
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  Extensive and coordinated control of allele-specific expression by both transcription and translation in Candida albicans

  • Dale Muzzey,
  • Gavin Sherlock,
  • and Jonathan S. Weissman

  Genome Res. June 2014 24: 963-973; Published in Advance April 14, 2014, doi:10.1101/gr.166322.113
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  Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression

  • Ferhat Ay,
  • Evelien M. Bunnik,
  • Nelle Varoquaux,
  • Sebastiaan M. Bol,
  • Jacques Prudhomme,
  • Jean-Philippe Vert,
  • William Stafford Noble,
  • and Karine G. Le Roch

  Genome Res. June 2014 24: 974-988; Published in Advance March 26, 2014, doi:10.1101/gr.169417.113
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