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Research

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  PRDM9 binding organizes hotspot nucleosomes and limits Holliday junction migration

  • Christopher L. Baker,
  • Michael Walker,
  • Shimpei Kajita,
  • Petko M. Petkov,
  • and Kenneth Paigen

  Genome Res. May 2014 24: 724-732; Published in Advance March 6, 2014, doi:10.1101/gr.170167.113
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  Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis

  • Henne Holstege,
  • Wayne Pfeiffer,
  • Daoud Sie,
  • Marc Hulsman,
  • Thomas J. Nicholas,
  • Clarence C. Lee,
  • Tristen Ross,
  • Jue Lin,
  • Mark A. Miller,
  • Bauke Ylstra,
  • Hanne Meijers-Heijboer,
  • Martijn H. Brugman,
  • Frank J.T. Staal,
  • Gert Holstege,
  • Marcel J.T. Reinders,
  • Timothy T. Harkins,
  • Samuel Levy,
  • and Erik A. Sistermans

  Genome Res. May 2014 24: 733-742; Published in Advance April 23, 2014, doi:10.1101/gr.162131.113
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  Neo-antigens predicted by tumor genome meta-analysis correlate with increased patient survival

  • Scott D. Brown,
  • Rene L. Warren,
  • Ewan A. Gibb,
  • Spencer D. Martin,
  • John J. Spinelli,
  • Brad H. Nelson,
  • and Robert A. Holt

  Genome Res. May 2014 24: 743-750; Published in Advance April 29, 2014, doi:10.1101/gr.165985.113
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  Enhancer-targeted genome editing selectively blocks innate resistance to oncokinase inhibition

  • Dan E. Webster,
  • Brook Barajas,
  • Rose T. Bussat,
  • Karen J. Yan,
  • Poornima H. Neela,
  • Ross J. Flockhart,
  • Joanna Kovalski,
  • Ashley Zehnder,
  • and Paul A. Khavari

  Genome Res. May 2014 24: 751-760; Published in Advance January 17, 2014, doi:10.1101/gr.166231.113
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  Recurrent epimutations activate gene body promoters in primary glioblastoma

  • Raman P. Nagarajan,
  • Bo Zhang,
  • Robert J.A. Bell,
  • Brett E. Johnson,
  • Adam B. Olshen,
  • Vasavi Sundaram,
  • Daofeng Li,
  • Ashley E. Graham,
  • Aaron Diaz,
  • Shaun D. Fouse,
  • Ivan Smirnov,
  • Jun Song,
  • Pamela L. Paris,
  • Ting Wang,
  • and Joseph F. Costello

  Genome Res. May 2014 24: 761-774; Published in Advance April 7, 2014, doi:10.1101/gr.164707.113
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  Identifying mRNA sequence elements for target recognition by human Argonaute proteins

  • Jingjing Li,
  • TaeHyung Kim,
  • Razvan Nutiu,
  • Debashish Ray,
  • Timothy R. Hughes,
  • and Zhaolei Zhang

  Genome Res. May 2014 24: 775-785; Published in Advance March 24, 2014, doi:10.1101/gr.162230.113
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  Evolution of splicing regulatory networks in Drosophila

  • C. Joel McManus,
  • Joseph D. Coolon,
  • Jodi Eipper-Mains,
  • Patricia J. Wittkopp,
  • and Brenton R. Graveley

  Genome Res. May 2014 24: 786-796; Published in Advance February 10, 2014, doi:10.1101/gr.161521.113
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  Tempo and mode of regulatory evolution in Drosophila

  • Joseph D. Coolon,
  • C. Joel McManus,
  • Kraig R. Stevenson,
  • Brenton R. Graveley,
  • and Patricia J. Wittkopp

  Genome Res. May 2014 24: 797-808; Published in Advance February 24, 2014, doi:10.1101/gr.163014.113
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  High-resolution mapping defines the cooperative architecture of Polycomb response elements

  • Guillermo A. Orsi,
  • Sivakanthan Kasinathan,
  • Kelly T. Hughes,
  • Sarah Saminadin-Peter,
  • Steven Henikoff,
  • and Kami Ahmad

  Genome Res. May 2014 24: 809-820; Published in Advance March 25, 2014, doi:10.1101/gr.163642.113
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  Genome methylation in D. melanogaster is found at specific short motifs and is independent of DNMT2 activity

  • Sachiko Takayama,
  • Joseph Dhahbi,
  • Adam Roberts,
  • Guanxiong Mao,
  • Seok-Jin Heo,
  • Lior Pachter,
  • David I.K. Martin,
  • and Dario Boffelli

  Genome Res. May 2014 24: 821-830; Published in Advance February 20, 2014, doi:10.1101/gr.162412.113
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  Widespread and frequent horizontal transfers of transposable elements in plants

  • Moaine El Baidouri,
  • Marie-Christine Carpentier,
  • Richard Cooke,
  • Dongying Gao,
  • Eric Lasserre,
  • Christel Llauro,
  • Marie Mirouze,
  • Nathalie Picault,
  • Scott A. Jackson,
  • and Olivier Panaud

  Genome Res. May 2014 24: 831-838; Published in Advance February 11, 2014, doi:10.1101/gr.164400.113
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  Predicting the virulence of MRSA from its genome sequence

  • Maisem Laabei,
  • Mario Recker,
  • Justine K. Rudkin,
  • Mona Aldeljawi,
  • Zeynep Gulay,
  • Tim J. Sloan,
  • Paul Williams,
  • Jennifer L. Endres,
  • Kenneth W. Bayles,
  • Paul D. Fey,
  • Vijaya Kumar Yajjala,
  • Todd Widhelm,
  • Erica Hawkins,
  • Katie Lewis,
  • Sara Parfett,
  • Lucy Scowen,
  • Sharon J. Peacock,
  • Matthew Holden,
  • Daniel Wilson,
  • Timothy D. Read,
  • Jean van den Elsen,
  • Nicholas K. Priest,
  • Edward J. Feil,
  • Laurence D. Hurst,
  • Elisabet Josefsson,
  • and Ruth C. Massey

  Genome Res. May 2014 24: 839-849; Published in Advance April 9, 2014, doi:10.1101/gr.165415.113
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  A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection

  • Katherine J. Siddle,
  • Matthieu Deschamps,
  • Ludovic Tailleux,
  • Yohann Nédélec,
  • Julien Pothlichet,
  • Geanncarlo Lugo-Villarino,
  • Valentina Libri,
  • Brigitte Gicquel,
  • Olivier Neyrolles,
  • Guillaume Laval,
  • Etienne Patin,
  • Luis B. Barreiro,
  • and Lluís Quintana-Murci

  Genome Res. May 2014 24: 850-859; Published in Advance January 30, 2014, doi:10.1101/gr.161471.113
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