Volume 24, Issue 6 | June 2014

Research
- - Genome-wide signals of positive selection in human evolution
    David Enard
    Philipp W. Messer
    Dmitri A. Petrov
    First Published March 11, 2014
  - Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications
    Artur Veloso
    Killeen S. Kirkconnell
    Brian Magnuson
    Benjamin Biewen
    Michelle T. Paulsen
    First Published April 8, 2014
  - Widespread context dependency of microRNA-mediated regulation
    Florian Erhard
    Jürgen Haas
    Diana Lieber
    Georg Malterer
    Lukasz Jaskiewicz
    First Published March 25, 2014
  - Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis
    Catia Attanasio
    Alex S. Nord
    Yiwen Zhu
    Matthew J. Blow
    Simon C. Biddie
    Eric M. Mendenhall Jesse Dixon Crystal Wright Roya Hosseini Jennifer A. Akiyama Amy Holt Ingrid Plajzer-Frick Malak Shoukry Veena Afzal Bing Ren
    ...[+10 authors]...,
    Bradley E. Bernstein
    Edward M. Rubin
    Axel Visel
    Len A. Pennacchio
    First Published April 21, 2014
  - Inputs drive cell phenotype variability
    James Park
    Anthony Brureau
    Kate Kernan
    Alexandria Starks
    Sonali Gulati
    First Published March 26, 2014
  - Natural variation of histone modification and its impact on gene expression in the rat genome
    Carola Rintisch
    Matthias Heinig
    Anja Bauerfeind
    Sebastian Schafer
    Christin Mieth
    Giannino Patone Oliver Hummel Wei Chen Stuart Cook Edwin Cuppen Maria Colomé-Tatché Frank Johannes Ritsert C. Jansen Helen Neil
    ...[+9 authors]...,
    Michel Werner
    Michal Pravenec
    Martin Vingron
    Norbert Hubner
    First Published May 2, 2014
  - Polymerase theta-mediated end joining of replication-associated DNA breaks in C. elegans
    Sophie F. Roerink
    Robin van Schendel
    Marcel Tijsterman
    First Published March 10, 2014
  - Extensive and coordinated control of allele-specific expression by both transcription and translation in Candida albicans
    Dale Muzzey
    Gavin Sherlock
    Jonathan S. Weissman
    First Published April 14, 2014
  - Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
    Ferhat Ay
    Evelien M. Bunnik
    Nelle Varoquaux
    Sebastiaan M. Bol
    Jacques Prudhomme
    First Published March 26, 2014
Methods
- - Epistasis analysis for quantitative traits by functional regression model
    Futao Zhang
    Eric Boerwinkle
    Momiao Xiong
    First Published May 6, 2014
  - Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
    Ferhat Ay
    Timothy L. Bailey
    William Stafford Noble
    First Published February 5, 2014
  - Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins
    Sojung Kim
    Daesik Kim
    Seung Woo Cho
    Jungeun Kim
    Jin-Soo Kim
    First Published April 2, 2014
  - Gene disruption by cell-penetrating peptide-mediated delivery of Cas9 protein and guide RNA
    Suresh Ramakrishna
    Abu-Bonsrah Kwaku Dad
    Jagadish Beloor
    Ramu Gopalappa
    Sang-Kyung Lee
    First Published April 2, 2014
  - Single-cell genomics for dissection of complex malaria infections
    Shalini Nair
    Standwell C. Nkhoma
    David Serre
    Peter A. Zimmerman
    Karla Gorena
    First Published May 8, 2014
Resource
- - Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline
    Nicholas Stong
    Zhong Deng
    Ravi Gupta
    Sufen Hu
    Shiela Paul
    Amber K. Weiner Evan E. Eichler Tina Graves Catrina C. Fronick Laura Courtney
    ...[+5 authors]...,
    Richard K. Wilson
    Paul M. Lieberman
    Ramana V. Davuluri
    Harold Riethman
    First Published March 27, 2014
Errata
- - Errata
    First Published June 1, 2014
  - Errata
    First Published June 1, 2014

Table of Contents

Volume 24, Issue 6 | June 2014

Research

Genome-wide signals of positive selection in human evolution

Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications

Widespread context dependency of microRNA-mediated regulation

Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis

Inputs drive cell phenotype variability

Natural variation of histone modification and its impact on gene expression in the rat genome

Polymerase theta-mediated end joining of replication-associated DNA breaks in C. elegans

Extensive and coordinated control of allele-specific expression by both transcription and translation in Candida albicans

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression

Methods

Epistasis analysis for quantitative traits by functional regression model

Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts

Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins

Gene disruption by cell-penetrating peptide-mediated delivery of Cas9 protein and guide RNA

Single-cell genomics for dissection of complex malaria infections

Resource

Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline

Errata

Errata

Errata

Table of Contents

Volume 24, Issue 6 | June 2014

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Research

Methods

Resource

Errata