Volume 24, Issue 3 | March 2014

Research
- - A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes
    Lily Bazak
    Ami Haviv
    Michal Barak
    Jasmine Jacob-Hirsch
    Patricia Deng
    Rui Zhang Farren J. Isaacs
    ...[+2 authors]...,
    Gideon Rechavi
    Jin Billy Li
    Eli Eisenberg
    Erez Y. Levanon
    First Published December 17, 2013
  - The genetic basis for individual differences in mRNA splicing and APOBEC1 editing activity in murine macrophages
    Musa A. Hassan
    Vincent Butty
    Kirk D.C. Jensen
    Jeroen P.J. Saeij
    First Published November 18, 2013
  - Functional and topological characteristics of mammalian regulatory domains
    Orsolya Symmons
    Veli Vural Uslu
    Taro Tsujimura
    Sandra Ruf
    Sonya Nassari
    First Published January 7, 2014
  - Principles of nucleation of H3K27 methylation during embryonic development
    Simon J. van Heeringen
    Robert C. Akkers
    Ila van Kruijsbergen
    M. Asif Arif
    Lars L.P. Hanssen
    First Published December 11, 2013
  - Evolution at two levels of gene expression in yeast
    Carlo G. Artieri
    Hunter B. Fraser
    First Published December 6, 2013
  - Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast
    C. Joel McManus
    Gemma E. May
    Pieter Spealman
    Alan Shteyman
    First Published December 6, 2013
  - Regulatory modules controlling maize inflorescence architecture
    Andrea L. Eveland
    Alexander Goldshmidt
    Michael Pautler
    Kengo Morohashi
    Christophe Liseron-Monfils
    Michael W. Lewis Sunita Kumari Susumu Hiraga Fang Yang Erica Unger-Wallace Andrew Olson Sarah Hake
    ...[+7 authors]...,
    Erik Vollbrecht
    Erich Grotewold
    Doreen Ware
    David Jackson
    First Published December 4, 2013
  - Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis
    Huan Wang
    Pil Joong Chung
    Jun Liu
    In-Cheol Jang
    Michelle J. Kean
    First Published January 8, 2014
Methods
- - Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
    Jakob Skou Pedersen
    Eivind Valen
    Amhed M. Vargas Velazquez
    Brian J. Parker
    Morten Rasmussen
    Stinus Lindgreen Berit Lilje Desmond J. Tobin Theresa K. Kelly Søren Vang Robin Andersson Peter A. Jones Cindi A. Hoover Alexei Tikhonov Egor Prokhortchouk Edward M. Rubin Albin Sandelin
    ...[+12 authors]...,
    M. Thomas P. Gilbert
    Anders Krogh
    Eske Willerslev
    Ludovic Orlando
    First Published December 3, 2013
  - A fine-scale recombination map of the human–chimpanzee ancestor reveals faster change in humans than in chimpanzees and a strong impact of GC-biased gene conversion
    Kasper Munch
    Thomas Mailund
    Julien Y. Dutheil
    Mikkel Heide Schierup
    First Published November 4, 2013
  - Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees
    Yi-Chieh Wu
    Matthew D. Rasmussen
    Mukul S. Bansal
    Manolis Kellis
    First Published December 5, 2013
  - A mobile insulator system to detect and disrupt cis-regulatory landscapes in vertebrates
    José Bessa
    Mario Luengo
    Solangel Rivero-Gil
    Ana Ariza-Cosano
    António H.F. Maia
    Francisco J. Ruiz-Ruano
    ...[+1 authors]...,
    Pablo Caballero
    Silvia Naranjo
    Jaime J. Carvajal
    José Luis Gómez-Skarmeta
    First Published November 25, 2013
  - From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing
    Georgi K. Marinov
    Brian A. Williams
    Ken McCue
    Gary P. Schroth
    Jason Gertz
    First Published December 3, 2013
Resources
- - Endothelial, epithelial, and fibroblast cells exhibit specific splicing programs independently of their tissue of origin
    Pierre Mallinjoud
    Jean-Philippe Villemin
    Hussein Mortada
    Micaela Polay Espinoza
    François-Olivier Desmet
    First Published December 4, 2013
  - A biochemical landscape of A-to-I RNA editing in the human brain transcriptome
    Masayuki Sakurai
    Hiroki Ueda
    Takanori Yano
    Shunpei Okada
    Hideki Terajima
    Toutai Mitsuyama
    ...[+1 authors]...,
    Atsushi Toyoda
    Asao Fujiyama
    Hitomi Kawabata
    Tsutomu Suzuki
    First Published January 9, 2014
  - An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa
    Rosaria Scozzari
    Andrea Massaia
    Beniamino Trombetta
    Giovanna Bellusci
    Natalie M. Myres
    First Published January 6, 2014

Table of Contents

Volume 24, Issue 3 | March 2014

Research

A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes

The genetic basis for individual differences in mRNA splicing and APOBEC1 editing activity in murine macrophages

Functional and topological characteristics of mammalian regulatory domains

Principles of nucleation of H3K27 methylation during embryonic development

Evolution at two levels of gene expression in yeast

Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast

Regulatory modules controlling maize inflorescence architecture

Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis

Methods

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

A fine-scale recombination map of the human–chimpanzee ancestor reveals faster change in humans than in chimpanzees and a strong impact of GC-biased gene conversion

Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees

A mobile insulator system to detect and disrupt cis-regulatory landscapes in vertebrates

From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing

Resources

Endothelial, epithelial, and fibroblast cells exhibit specific splicing programs independently of their tissue of origin

A biochemical landscape of A-to-I RNA editing in the human brain transcriptome

An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa

Table of Contents

Volume 24, Issue 3 | March 2014

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Research

Methods

Resources