Volume 23, Issue 3 | March 2013

Research
- - Nonallelic homologous recombination between retrotransposable elements is a driver of de novo unbalanced translocations
    Caroline Robberecht
    Thierry Voet
    Masoud Zamani Esteki
    Beata A. Nowakowska
    Joris R. Vermeesch
    First Published December 3, 2012
  - Rare allelic forms of PRDM9 associated with childhood leukemogenesis
    Julie Hussin
    Daniel Sinnett
    Ferran Casals
    Youssef Idaghdour
    Vanessa Bruat
    Virginie Saillour Jasmine Healy Jean-Christophe Grenier Thibault de Malliard Stephan Busche Jean-François Spinella Mathieu Larivière Greg Gibson Anna Andersson Linda Holmfeldt Jing Ma Lei Wei Jinghui Zhang
    ...[+13 authors]...,
    Gregor Andelfinger
    James R. Downing
    Charles G. Mullighan
    Philip Awadalla
    First Published December 5, 2012
  - Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma
    David H. Gutmann
    Michael D. McLellan
    Ibrahim Hussain
    John W. Wallis
    Lucinda L. Fulton
    Robert S. Fulton Vincent Magrini Ryan Demeter Todd Wylie Cyriac Kandoth Jeffrey R. Leonard
    ...[+6 authors]...,
    Abhijit Guha
    Christopher A. Miller
    Li Ding
    Elaine R. Mardis
    First Published December 5, 2012
  - DAXX-dependent supply of soluble (H3.3–H4) dimers to PML bodies pending deposition into chromatin
    Erwan Delbarre
    Kristina Ivanauskiene
    Thomas Küntziger
    Philippe Collas
    First Published December 5, 2012
  - TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells
    Helen M. Rowe
    Adamandia Kapopoulou
    Andrea Corsinotti
    Liana Fasching
    Todd S. Macfarlan
    Yara Tarabay
    ...[+1 authors]...,
    Stéphane Viville
    Johan Jakobsson
    Samuel L. Pfaff
    Didier Trono
    First Published December 10, 2012
  - Spatial congregation of STAT binding directs selective nuclear architecture during T-cell functional differentiation
    Ofir Hakim
    Myong-Hee Sung
    Shingo Nakayamada
    Ty C. Voss
    Songjoon Baek
    First Published December 3, 2012
  - Different chromatin interfaces of the Drosophila dosage compensation complex revealed by high-shear ChIP-seq
    Tobias Straub
    Angelika Zabel
    Gregor D. Gilfillan
    Christian Feller
    Peter B. Becker
    First Published December 11, 2012
  - A chromatin link to caste identity in the carpenter ant Camponotus floridanus
    Daniel F. Simola
    Chaoyang Ye
    Navdeep S. Mutti
    Kelly Dolezal
    Roberto Bonasio
    First Published December 3, 2012
  - High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    Zhen Shi
    Taiowa A. Montgomery
    Yan Qi
    Gary Ruvkun
    First Published January 30, 2013
Methods
- - Genotype imputation via matrix completion
    Eric C. Chi
    Hua Zhou
    Gary K. Chen
    Diego Ortega Del Vecchyo
    Kenneth Lange
    First Published December 10, 2012
  - iReckon: Simultaneous isoform discovery and abundance estimation from RNA-seq data
    Aziz M. Mezlini
    Eric J.M. Smith
    Marc Fiume
    Orion Buske
    Gleb L. Savich
    Sohrab Shah
    ...[+1 authors]...,
    Sam Aparicio
    Derek Y. Chiang
    Anna Goldenberg
    Michael Brudno
    First Published November 29, 2012
  - Highly active zinc-finger nucleases by extended modular assembly
    Mital S. Bhakta
    Isabelle M. Henry
    David G. Ousterout
    Kumitaa Theva Das
    Sarah H. Lockwood
    Joshua F. Meckler Mark C. Wallen Artem Zykovich Yawei Yu
    ...[+4 authors]...,
    Heather Leo
    Lifeng Xu
    Charles A. Gersbach
    David J. Segal
    First Published December 5, 2012
  - Obligate Ligation-Gated Recombination (ObLiGaRe): Custom-designed nuclease-mediated targeted integration through nonhomologous end joining
    Marcello Maresca
    Victor Guosheng Lin
    Ning Guo
    Yi Yang
    First Published November 14, 2012
  - Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways
    Yiping Qi
    Yong Zhang
    Feng Zhang
    Joshua A. Baller
    Spencer C. Cleland
    First Published January 2, 2013
Resources
- - Dynamic DNA methylation across diverse human cell lines and tissues
    Katherine E. Varley
    Jason Gertz
    Kevin M. Bowling
    Stephanie L. Parker
    Timothy E. Reddy
    Florencia Pauli-Behn Marie K. Cross Brian A. Williams John A. Stamatoyannopoulos
    ...[+4 authors]...,
    Gregory E. Crawford
    Devin M. Absher
    Barbara J. Wold
    Richard M. Myers
    First Published January 16, 2013
  - Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing
    Thomas Zichner
    David A. Garfield
    Tobias Rausch
    Adrian M. Stütz
    Enrico Cannavó
    First Published December 6, 2012

Table of Contents

Volume 23, Issue 3 | March 2013

Research

Nonallelic homologous recombination between retrotransposable elements is a driver of de novo unbalanced translocations

Rare allelic forms of PRDM9 associated with childhood leukemogenesis

Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma

DAXX-dependent supply of soluble (H3.3–H4) dimers to PML bodies pending deposition into chromatin

TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells

Spatial congregation of STAT binding directs selective nuclear architecture during T-cell functional differentiation

Different chromatin interfaces of the Drosophila dosage compensation complex revealed by high-shear ChIP-seq

A chromatin link to caste identity in the carpenter ant Camponotus floridanus

High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes

Methods

Genotype imputation via matrix completion

iReckon: Simultaneous isoform discovery and abundance estimation from RNA-seq data

Highly active zinc-finger nucleases by extended modular assembly

Obligate Ligation-Gated Recombination (ObLiGaRe): Custom-designed nuclease-mediated targeted integration through nonhomologous end joining

Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways

Resources

Dynamic DNA methylation across diverse human cell lines and tissues

Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

Table of Contents

Volume 23, Issue 3 | March 2013

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Research

Methods

Resources