Volume 21, Issue 9 | September 2011

Research
- - Unusually effective microRNA targeting within repeat-rich coding regions of mammalian mRNAs
    Michael Schnall-Levin
    Olivia S. Rissland
    Wendy K. Johnston
    Norbert Perrimon
    David P. Bartel
    First Published June 17, 2011
  - Coactivation of GR and NFKB alters the repertoire of their binding sites and target genes
    Nagesha A.S. Rao
    Melysia T. McCalman
    Panagiotis Moulos
    Kees-Jan Francoijs
    Aristotelis Chatziioannou
    First Published July 12, 2011
  - Alterations in TCF7L2 expression define its role as a key regulator of glucose metabolism
    Daniel Savic
    Honggang Ye
    Ivy Aneas
    Soo-Young Park
    Graeme I. Bell
    First Published June 14, 2011
  - Histone H3 trimethylation at lysine 36 is associated with constitutive and facultative heterochromatin
    Sophie Chantalat
    Arnaud Depaux
    Patrick Héry
    Sophie Barral
    Jean-Yves Thuret
    First Published July 29, 2011
  - Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features
    Christelle Cayrou
    Philippe Coulombe
    Alice Vigneron
    Slavica Stanojcic
    Olivier Ganier
    Isabelle Peiffer Eric Rivals
    ...[+2 authors]...,
    Aurore Puy
    Sabine Laurent-Chabalier
    Romain Desprat
    Marcel Méchali
    First Published July 12, 2011
  - Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
    Stacia K. Wyman
    Emily C. Knouf
    Rachael K. Parkin
    Brian R. Fritz
    Daniel W. Lin
    First Published August 3, 2011
  - Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    Jianbin Wang
    Benjamin Czech
    Amanda Crunk
    Adam Wallace
    Makedonka Mitreva
    First Published June 17, 2011
  - Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing
    Yingjia Shen
    R.C. Venu
    Kan Nobuta
    Xiaohui Wu
    Varun Notibala
    Caghan Demirci
    ...[+1 authors]...,
    Blake C. Meyers
    Guo-Liang Wang
    Guoli Ji
    Qingshun Q. Li
    First Published August 3, 2011
  - Genome-wide detection of novel regulatory RNAs in E. coli
    Rahul Raghavan
    Eduardo A. Groisman
    Howard Ochman
    First Published June 10, 2011
Methods
- - Accurate and comprehensive sequencing of personal genomes
    Subramanian S. Ajay
    Stephen C.J. Parker
    Hatice Ozel Abaan
    Karin V. Fuentes Fajardo
    Elliott H. Margulies
    First Published July 19, 2011
  - Barcoding bias in high-throughput multiplex sequencing of miRNA
    Shahar Alon
    Francois Vigneault
    Seda Eminaga
    Danos C. Christodoulou
    Jonathan G. Seidman
    First Published July 12, 2011
Resources
- - Cactus: Algorithms for genome multiple sequence alignment
    Benedict Paten
    Dent Earl
    Ngan Nguyen
    Mark Diekhans
    Daniel Zerbino
    First Published June 10, 2011
  - A probabilistic disease-gene finder for personal genomes
    Mark Yandell
    Chad Huff
    Hao Hu
    Marc Singleton
    Barry Moore
    First Published June 23, 2011
  - Synthetic spike-in standards for RNA-seq experiments
    Lichun Jiang
    Felix Schlesinger
    Carrie A. Davis
    Yu Zhang
    Renhua Li
    First Published August 4, 2011
  - Integrative analysis of environmental sequences using MEGAN4
    Daniel H. Huson
    Suparna Mitra
    Hans-Joachim Ruscheweyh
    Nico Weber
    Stephan C. Schuster
    First Published June 20, 2011
Erratum
- - Erratum
    First Published September 1, 2011

Table of Contents

Volume 21, Issue 9 | September 2011

Research

Unusually effective microRNA targeting within repeat-rich coding regions of mammalian mRNAs

Coactivation of GR and NFKB alters the repertoire of their binding sites and target genes

Alterations in TCF7L2 expression define its role as a key regulator of glucose metabolism

Histone H3 trimethylation at lysine 36 is associated with constitutive and facultative heterochromatin

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity

Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles

Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing

Genome-wide detection of novel regulatory RNAs in E. coli

Methods

Accurate and comprehensive sequencing of personal genomes

Barcoding bias in high-throughput multiplex sequencing of miRNA

Resources

Cactus: Algorithms for genome multiple sequence alignment

A probabilistic disease-gene finder for personal genomes

Synthetic spike-in standards for RNA-seq experiments

Integrative analysis of environmental sequences using MEGAN4

Erratum

Erratum

Table of Contents

Volume 21, Issue 9 | September 2011

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Research

Methods

Resources

Erratum